AT1G23450.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
pentatricopeptide (PPR) repeat-containing protein | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: mitochondrion; EXPRESSED IN: root, pedicel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G74600.1); Has 39682 Blast hits to 12642 proteins in 175 species: Archae - 0; Bacteria - 2; Metazoa - 59; Fungi - 8; Plants - 39279; Viruses - 0; Other Eukaryotes - 334 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:8324698..8326697 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 74271.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.66 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.14 | ||||||||||||||||||||||||||||||||
| Length | 666 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRGAQALYFL RRTTTLAQHL CSLTPFIATP RMDFSSFLEE NPSDLVYTHN RRIDELIKSG NLLSAHEAFD EMSVRDVVTY NLLISGNSRY GCSLRAIELY 101: AEMVSCGLRE SASTFPSVLS VCSDELFCRE GIQVHCRVIS LGFGCNMFVR SALVGLYACL RLVDVALKLF DEMLDRNLAV CNLLLRCFCQ TGESKRLFEV 201: YLRMELEGVA KNGLTYCYMI RGCSHDRLVY EGKQLHSLVV KSGWNISNIF VANVLVDYYS ACGDLSGSMR SFNAVPEKDV ISWNSIVSVC ADYGSVLDSL 301: DLFSKMQFWG KRPSIRPFMS FLNFCSRNSD IQSGKQIHCY VLKMGFDVSS LHVQSALIDM YGKCNGIENS ALLYQSLPCL NLECCNSLMT SLMHCGITKD 401: IIEMFGLMID EGTGIDEVTL STVLKALSLS LPESLHSCTL VHCCAIKSGY AADVAVSCSL IDAYTKSGQN EVSRKVFDEL DTPNIFCLTS IINGYARNGM 501: GTDCVKMLRE MDRMNLIPDE VTILSVLSGC SHSGLVEEGE LIFDSLESKY GISPGRKLYA CMVDLLGRAG LVEKAERLLL QARGDADCVA WSSLLQSCRI 601: HRNETIGRRA AEVLMNLEPE NFAVYIQVSK FYFEIGDFEI SRQIREIAAS RELMREIGYS SVVVKN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)