AT1G23160.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.990 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Auxin-responsive GH3 family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Auxin-responsive GH3 family protein; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT5G13320.1); Has 1394 Blast hits to 1308 proteins in 220 species: Archae - 0; Bacteria - 431; Metazoa - 54; Fungi - 2; Plants - 672; Viruses - 0; Other Eukaryotes - 235 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:8209232..8211325 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 65621.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.12 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||
| Length | 578 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSLTSDLSEK SSDKMKVLED LTSNVTQIQD NVLEEILTLN ANTNYLQKFF LGSFDKESFK KNVPVVTYED VKPYIERVVN GEPSNVISAR PITGFVLSTG 101: TSGGAQKMMP WNEKYLDNLT FMYDLRMHII SNNVKDVEKG KAMMFYFTKL ESITPSGLPA RVASSSYLKS NYFKNRPSNW YYSYTSPDEV TLCPDNKQNL 201: YCHLLCGLVQ RNEVTRMGSI FASVMVRAIK FLEDSWEELC SNIRSGQLSE WITDIGCRDS VSLVLGGPHP EAADTIEQIC NQKCWKGIIT RLWPKAKYIE 301: TIVTGSMVQY VPTLNYYSNN MLPLISTIYA SSETQFGLNL NPMCKPEDVS YTFMPNVSYF EFIPVDGDKN DVVDLADVKL GCCYEAVVTN FSGLYRIRVG 401: DILVVTGFHN KAPQFRFIRR DNVVLSIDLD KTNEDDLFKA VNNAKLTLDS SHLMLIDFTS YADISTIPGH YVVYWEVKNK NEDKKSKKHI ELKEETFSEC 501: CLLMEDSLDS VYKICRFKEE SVGPLEIKVV RQGTFDSLMD YFISQGASIG QYKTPRCIKS GKALEVLEEN VVATFFST |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)