AT1G22730.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.990 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : MA3 domain-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
MA3 domain-containing protein; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891); BEST Arabidopsis thaliana protein match is: MA3 domain-containing protein (TAIR:AT5G63190.2); Has 2025 Blast hits to 776 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 1297; Fungi - 8; Plants - 551; Viruses - 0; Other Eukaryotes - 169 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:8046511..8048769 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 77248.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.85 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||
| Length | 693 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEHQDLTDSR KDPLCISQLK ISSSSLDPLP QANMAEDLTK SRRHSPIKVE GSEETWGVED DDDLTDPIFD TIEGNGHSDP TSCFDADLSE YKKKATVIVE 101: EYFGTNDVVS VVNELKELGM AEYRYYFVKK LVSMAMDRHD KEKEMAAFLL STLYADVIDP PEVYRGFNKL VASADDLSVD IPDAVDVLAV FVARAIVDDI 201: LPPAFLKKQM KLLPDNSKGV EVLRKAEKSY LATPLHAEVV EKRWGGTDNW TAEDVKARIN DLLKEYVMSG DKKEAFRCIK GLKVPFFHHE IVKRALIMAM 301: ERRKAQVRLL DLLKETIEVG LINSTQVTKG FSRIIDSIED LSLDIPDARR ILQSFISKAA SEGWLCASSL KSLSADAGEK LLENSSANVF KDKAKSIIRE 401: YFLSGDTSEV VHCLDTELNA SSSQLRAIFV KYLITLAMDR KKREKEMACV LVSTLGFPPK DVRSAFSMLI ESADDTALDN PVVVEDLAMF LARAVVDEVL 501: APRDLEEVLN QTPEAGSSVG EKVIQMAKTL LKARLSGERI LRCWGGGGIE TNSPGSTVKE VKEKIQILLE EYVSGGDLRE ASRCVKELGM PFFHHEVVKK 601: SVVRIIEEKE NEERLWKLLK VCFDSGLVTI YQMTKGFKRV DESLEDLSLD VPDAAKKFSS CVERGKLEGF LDESFASEDS QSKKQNGSSS SSG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)