AT1G22660.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Polynucleotide adenylyltransferase family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Polynucleotide adenylyltransferase family protein; FUNCTIONS IN: tRNA adenylyltransferase activity, RNA binding, nucleotidyltransferase activity; INVOLVED IN: tRNA processing, RNA processing; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Poly A polymerase, head domain (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: Polynucleotide adenylyltransferase family protein (TAIR:AT2G17580.1); Has 8643 Blast hits to 8635 proteins in 2546 species: Archae - 2; Bacteria - 6091; Metazoa - 128; Fungi - 234; Plants - 120; Viruses - 8; Other Eukaryotes - 2060 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:8017410..8021538 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68957.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.56 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||
| Length | 605 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRLSSLPINT LINLPKSLFL ISPFRFRNLN RSLTVASRIS STLLRVSGVS SRPCGYWFST NAAMTNVGEE DKQSIPSIEL KENIELTDKE RKIFDRLLST 101: LRYCNLDTQL RVAGGWVRDK LLGKESDDID IAIDNMSGSE FLDKFKEYLS SRDEEVQGDT VIERNPDQSK HLETAKLRIY DQWIDFVNLR SEEYTENSRI 201: PTMKFGTAKD DAFRRDLTIN SLFYNINSGA VEDLTERGID DLKSGKIVTP LPAKATFLDD PLRVLRAVRF GARFGFTLDE ELKEAASSEE VRVALGEKIS 301: RERIGNEIDL MISGNGPVSA VTYLSDLKLF SVVFALPSSA EPSPPENCGS LSQSYLEAMW SLLKTPRPGK FSGEQRRLAL YAAMFLPFRK TVYKDTKGKS 401: IPVVNHIFKF SMKRKTSDAE TVMNIHQTTE RFRSLIPSLE VKKDVELDEL TWAADILEHW KSITLNDPVI PATSKIRVLT GFLLRDIKDF WRVSLLTSLL 501: LSATVDGSND HQDIGQLDFQ LERMRETYLT VEATIHELGL DKIWDAKPLV NGREIMQIAE LKGGSRLIRE WQQKLLTWQL AYPNGTAEEC KEWMRDIKAK 601: RQRIE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)