AT1G22600.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.824 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Late embryogenesis abundant protein (LEA) family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Late embryogenesis abundant protein (LEA) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, embryo, sperm cell, hypocotyl, flower; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: late embryogenesis abundant domain-containing protein / LEA domain-containing protein (TAIR:AT1G72100.1); Has 169 Blast hits to 166 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 72; Fungi - 8; Plants - 85; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:7987308..7989187 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42531.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.08 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||
| Length | 385 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTKLLALSLV LSALFTVGHC TGSEDDIIVR DGHRVVVVEY DRDGETNTRV LISPPGKEVD QKSRDEGEVF GNEKRETASS LPEEEEREHH ATPGELICDA 101: IGKCKHKLGT VLGRVKDRTA SDLSDETPEM TVAREALEVE EKVSWKAREA RGKVNERATK KAHRVQKVLE KVQIAVRGIG TVVATALGLT KIGSVVGIVG 201: IAAAYGMCVW VTFVSGYVLA SVLGEQQFGV VQSKMYPVYF KAVSVGILVG LLGHVIGRRR KVFTDAVDMW QSVNLLSSIL MVEANASFVY TRATKAMFEL 301: IKAEKEDGRG FDTSDQSQSS ESAGRTRGKK KVTEKTDEDV VKQRLTKLSE RMRKLNAYSS RLNLLTLMSL TWHFVYLGYR LSLTC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)