AT1G22275.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Myosin heavy chain-related protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
One of two nearly identical proteins (ZYP1a) identified by similarity to transverse filament (TF) proteins. These proteins are involved in chromosome synapsis during meiosis I and localize to the synaptonemal complex (SC). Single mutants have reduced fertility and double mutants (induced by RNAi) have severely reduced fertility. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ZYP1b; BEST Arabidopsis thaliana protein match is: Myosin heavy chain-related protein (TAIR:AT1G22260.1); Has 145563 Blast hits to 75800 proteins in 3137 species: Archae - 2001; Bacteria - 27401; Metazoa - 61286; Fungi - 11195; Plants - 7048; Viruses - 666; Other Eukaryotes - 35966 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:7867245..7872066 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 99027.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.13 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.92 | ||||||||||||||||||||||||||||||||||||||||
| Length | 856 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQKLGFPAMK SFDQLRSLPG SAKTYFFSTR PPQDSVSSGS FSNLKLTAEK LVKDQAAMRT DLELANCKLK KSMEHVYALE EKLQSAFNEN AKLRVRQKED 101: EKLWRGLESK FSSTKTLCDQ LTETLQHLAS QVQDAEKDKG FFETKFNTSS EAINSLNQQM RDMSLRLDAA KEEITSRDKE LEELKLEKQH KEMFYQTERC 201: GTASLIEKKD AVITELETTA AERKLKIEKL NSQLEKLHLE LTTKEDEVIH LVSIQEKLEK EKTNVQLSSD ELFEKLVRSE QEVKKLDELV HYLIAELTEL 301: DKKNLTFKEK FDKLSGLYDT HFMLLRKDRD LASDRAQRSF DQLQGELFRV AAEKEALESS GNELSEKIVE LQNDKESLIS QLSGVRCSAS QTIDKLEFEA 401: KGLVLKNAET ESVISKLKEE IDTLLESVRT SEDKKKELSI KLSSLEIESK DKYEKLQADA QRQVGELETL QKESESHQLQ ADLLAKEVNQ LQTIIEEKGH 501: LILQCNENEK NINQQIIKDK ELLATAETKL AEAKKQYDLM LESKQLELSR HLKELSQRND QAINEIRRKY DVEKHEIINS EKDKVEKIIK ELSTKYDKGL 601: SDCKEESKRQ LLTIQEEHSS RILNIREEHE SKELNLKAKY DQELRQNQIQ AENELKERIT ALKSEHDAQL KAFKCQYEDD CKKLQEELDL QRKKEERQRA 701: LVQLQWKVMS DNPPEEQEVN SNKDYSHSSV KVKESRLGGN KRSEHITESP FVKAKVTSVS NILKEATNPK HHSKVTHREY EVETNNGRIP KRRKTRQTTM 801: FQEPQRRSTR LTPKLMTPTI IAKETAMADH PHSANIGDLF SEGSLNPYAD DPYAFD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)