AT1G22260.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Myosin heavy chain-related protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
One of two nearly identical proteins (ZYP1b) identified by similarity to transverse filament (TF) proteins. These proteins are involved in chromosome synapsis during meiosis I and localize to the synaptonemal complex (SC). Single mutants have reduced fertility and double mutants (induced by RNAi) have severely reduced fertility. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ZYP1a; BEST Arabidopsis thaliana protein match is: Myosin heavy chain-related protein (TAIR:AT1G22275.1); Has 173955 Blast hits to 88084 proteins in 3391 species: Archae - 2245; Bacteria - 35093; Metazoa - 72717; Fungi - 13338; Plants - 8123; Viruses - 835; Other Eukaryotes - 41604 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:7860160..7865142 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 100012.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.97 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.93 | ||||||||||||||||||||||||||||||||||||||||
| Length | 871 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQKLGFPAMK SLDKPRSLSG SANMYSFSNR KPPDSVSSGS FSNLKLTAEK LVKDQAAMRT DLELANCKLK KSMEHVYALE EKLQNAFNEN AKLRVRKKED 101: EKLWRGLESK FSSTKTLCDQ LTETLQHLAS QVQDAEKDKG FFETKFSTSS EAIDSLNQQM RDMSLRLDAA KEEITSRDKE LEELKLEKQQ KEMFYQTERC 201: GTASLIEKKD AVITKLEASA AERKLNIENL NSQLEKVHLE LTTKEDEVKD LVSIQEKLEK EKTSVQLSAD NCFEKLVSSE QEVKKLDELV QYLVAELTEL 301: DKKNLTFKEK FDKLSGLYDT HIMLLQKDRD LALDRAQRSF DNLQGELFRV AATKEALESA GNELNEKIVE LQNDKESLIS QLSGLRCSTS QTIDKLESEA 401: KGLVSKHADA ESAISQLKEE METLLESVKT SEDKKQELSL KLSSLEMESK EKCEKLQADA QRQVEELETL QKESESHQLQ ADLLAKEVNQ LQTVIEEKGH 501: VILQCNENEK QLNQQIIKDK ELLATAETKL AEAKKQYDLM LESKQLELSR HLKELSQRND QAINEIRRKY DVEKHEIINS EKDKVEKIIK DLSNKFDKEL 601: SDCKEESKRQ LLTIQEEHSS LILSLREEHE SKELNLKAKY DQELRQSQIQ AENELKERIT ALKSEHDAQL KAFKCQYEDD CKKLQEELDL QRKKEERQRA 701: LVQLQWKVMS DNPPEEQEVN SNKNYSISKD SRLGGSKRSE HIRVRSDNDN VQDSPFVKAK ETPVSKILKK AQNVNAGSVL SIPNPKHHSK VTHREYEVET 801: NNGRVTKRRK TRNTTMFEEP QRRRTRATPK LTPQSIAKGT GMTSHARSAN IGDLFSEGSL NPYADDPYAF D |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)