AT1G22240.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 nucleus 0.500 ASURE: cytosol,nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
Arabidopsis cell culture (plastidal marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : pumilio 8 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
pumilio 8 (PUM8); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cytoplasm; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 7 (TAIR:AT1G78160.1); Has 2896 Blast hits to 1722 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 700; Fungi - 827; Plants - 762; Viruses - 0; Other Eukaryotes - 607 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:7853084..7854963 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 58016.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.72 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 515 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMRGEFGEAS SLSRSPSSPL QTEPHPQSPK FYRNHYVFSG DHSSYNSSSR FCLRSPSDYS LSSYFSNGLC SSEDGSSQFA SPPLDGLMTK YNFGGDDLGL 101: CESFDLLNVG EEDKTHHQTQ RSSFGNYEAN GDGGFRYYSG FGVDQKDHQI SNSWNLGMQS CNMNNYSVPV HGKSGVGALF DHQGISSNPN ESLPKVSEFQ 201: GYVYFMAKDQ HGCRFLQWIF EDGSALDALV IFSEVIPHVV ELMMDPFGNY LMQKLLDVCN EEQRTQIILM VTSEPGQLIR ISLNAYGTRV VQRLVESIKT 301: RKQISLVKSA LRPGFLNLIR DLNGNHVIQR CLQCLSTEDN EFIFEDATKF CIDIATHRHG CCVLQKCIAY SSGLQREKLV TEISRNSLFL AQDPYGNYAV 401: QFVLELRDFS AIAAMLAQLK GHYVELSMQK FSSHMVERCL THCPESRPQI VRELISVPHF DILIQDPYAN FVIQAALAVT KGSLHATLVE VIRPHSILRN 501: NPYCKRIFSR NLLKN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)