AT1G22120.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.981 What is SUBAcon? |
|
||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||
| Computational Description (TAIR10) |
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:7806655..7809632 | ||||||||||||||||||||
| Molecular Weight (calculated) | 51744.60 Da | ||||||||||||||||||||
| IEP (calculated) | 5.34 | ||||||||||||||||||||
| GRAVY (calculated) | -0.73 | ||||||||||||||||||||
| Length | 462 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASNDDLEFS FFDLPETFGV LTECGGNASL LVSENEHNDL VGYNPVSAAT SDVFPSPLIE NSNTDQETLT RTSSSFDQET AIVAHNQSFH QDDDYSKYLT 101: TAENFNDMPS SVFSNGQREN VDSGSYVLTS SNQMMTTGLQ STDVQHGPPE QSYQQPLLSQ TIPHFSNQPY VSTLVRSNIQ EVGQANGPTN LNLIHHGLQD 201: HHFHPSLYQK EQYNHTDSLL EQIMRIHETE HQMQLPKFTN MSSTPTSVGT LLNNQCLSPF ASTPTILTHP ETGNYSPFTH RSYQPDSFAY AFQKSSSLNP 301: TRRPRGRPRR IQSVMPPSLT ITTPQNMSLV PAIQTLSTPP STPYRAQEKG KQHVTAMPSL NPTLYNQYQN SYTNSMIQQG GGLSQRDCYD QFENEGSSSK 401: RKRIMLPFQE KSIAESSSVS LWQDGNRRSS AANNNEERLE NTVYDPFYAG VGLPLDPHLR FF |
||||||||||||||||||||
| See Also |
|
||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)