AT1G21860.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SKU5 similar 7 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SKU5 similar 7 (sks7); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: plant-type cell wall; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5 similar 8 (TAIR:AT1G21850.1); Has 5059 Blast hits to 4986 proteins in 916 species: Archae - 16; Bacteria - 1499; Metazoa - 256; Fungi - 1883; Plants - 1282; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:7671028..7674215 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60375.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.52 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||||||||||
| Length | 538 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKVKSMNTRA MITTLLFLIS LAFAEDPYRF FEWHVTYGNI SPLGVAQQGI LINGKFPGPD IISITNDNLI INVFNHLDEP FLLSWNGIRN WKNSFQDGVY 101: GTMCPIPPGK NYTYALQVKD QIGSFYYFPS LGFHKAAGGF GGIRISSRAL IPVPFPTPAD DYTLLVGDWY KTNHKDLKAQ LDNGGKLPLP DGILINGRSS 201: GATLNIEPGK TYRLRISNVG LQNSLNFRIQ NHTMKLVEVE GRYTIQNLFS SLDVHVGQSY SVLITADQPA KDYYVVVSSR FTSKILTTTG VLHYSNSVAP 301: VSGPIPDGPI KLSWSFNQAR AIRTNLTASG PRPNPQGSYR YGVINITRTI RLANNLGHIE GKQRYAVNSA SFYPADTPLK LVDYFKIDGV YKPGSISDQP 401: TNGAIFPTTS VMQADFRAFV EVIFENSEDI VQSWHLDGYS FYVVGMELGK WSPASRKVYN LNDAILRCTI QVYPRSWTAI YIALDNVGMW NMRSEIWERQ 501: YLGQQFYMRV YTTSTSLRDE YLIPKNALLC GRASSSHR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)