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AT1G21695.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.859
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : hydroxyproline-rich glycoprotein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77400.1); Has 5872 Blast hits to 1129 proteins in 201 species: Archae - 0; Bacteria - 86; Metazoa - 581; Fungi - 299; Plants - 356; Viruses - 57; Other Eukaryotes - 4493 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JWSDeggNOG:ENOG41104NNEMBL:AC007727EMBL:BT012183
EMBL:CP002684EnsemblPlants:AT1G21695EnsemblPlants:AT1G21695.1entrez:838773
GeneID:838773Gramene:AT1G21695.1hmmpanther:PTHR35466hmmpanther:PTHR35466:SF2
HOGENOM:HOG000090634KEGG:ath:AT1G21695OMA:NFYESGTPIR:C86350
Proteomes:UP000006548RefSeq:NP_683321.1TAIR:AT1G21695UniGene:At.49901
UniGene:At.72724UniProt:Q9XI08
Coordinates (TAIR10) chr1:+:7619132..7619785
Molecular Weight (calculated) 23386.10 Da
IEP (calculated) 10.48
GRAVY (calculated) -0.93
Length 217 amino acids
Sequence (TAIR10)
(BLAST)
001: MVDGDDSFKR PGAVPFKWEI RPGVPKTRPG DDDPALLQPP PPNKLPPLKL KSTPPSNSPS PSSSSSFFSE SRSRPVSPFA PPPSFKLKSP SDSDSNCSAS
101: PTPYFRSSSP RAGGSLPRCF FPKSLFGLKK SKSGDLKKTG QQEPSSTTSE SDNFYESGTT LSPSEEDSSQ GSPVSSRWSS PKSSFSSRRG SPLKRTDSDL
201: SSYEKKTMLM IARSRLG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)