AT1G21620.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 ASURE: cytosol What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : pumilio 20 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
pumilio 20 (PUM20); FUNCTIONS IN: RNA binding, binding; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 18 (TAIR:AT5G60110.1); Has 2073 Blast hits to 1204 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 801; Fungi - 431; Plants - 579; Viruses - 0; Other Eukaryotes - 262 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:7579129..7580171 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 35416.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.17 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||||||
| Length | 308 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAHQLRFAAA REPISEEYPA VALPHPRCIS VAFPPPRFTP SPSPLTNYSF LAALTPQELE MRLQIAMDVQ MISKLDQRKL QTMASLLTSD PDYFLMIARN 101: MNGSKRIQKL LGKTDDVDAL FAAAILRRFL HIITDKYASY VVRRGMTVFD KKKKKAMYEH ILHYASHIAR DKHALVLSND AYGNFVIQRV LKLNDLRSKN 201: NIVVSLRGHF VDLSFQKYGS YVVDVLLETK ESMVVVVEEL MECEGDMLMR LARNEYGNFL VCKALRVTQK EMVRTDLFWG LVHKLKPFHN LLRWSRGKNI 301: ASILNSIR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)