AT1G21580.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Zinc finger C-x8-C-x5-C-x3-H type family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); Has 6412 Blast hits to 4180 proteins in 441 species: Archae - 2; Bacteria - 615; Metazoa - 1993; Fungi - 936; Plants - 1540; Viruses - 149; Other Eukaryotes - 1177 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:7557822..7565655 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 238763.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.17 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.81 | ||||||||||||||||||||||||||||||||||||
| Length | 2166 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDSSHYNPTY DPWNSPYSPH LHPPSAPLPP PPPLPPPPPP RQSHPESPNL YGRSTQSNGQ RQDYLHQYSH HRQDLPPNTV VNQPTSNYYQ HPPPLQQQHQ 0101: PLSLQQQQQH PQYIPQQVSY EPQRISQPLT SSIQCTESQS DWVGFNEKRL DSWTVDSGPG RSRVDDGPSR NYQYDYSRNS SGVNRGLDGS SRSRDEFRSL 0201: GYARKESGVT RTEGNYQARG QLKSESDRYV RGLGDGNRVL SSSVGYGSDR YGLTVSRDVT RSSASREGAR ETRNEGRTLY PEKKDDYYHS EIEQYFDRGR 0301: REASNELNRT PRKQVQKKSA LLRLETPRSY KNSRENEWSR QHNHHNGNGK RFNSNSYRGK EHLGHSDRGL VEKQRGRSPV DLDISFKSNV LVAKPVASPT 0401: SAGIRSGASV TPRSIKARRA LLSDKNEKVS VTERNGKLGT HLSDEISVSE GFRRSTRQTT ASKNEKEPDS HSTPSSSDSG GKLNKVRFVN GVVQDSKVKL 0501: TDSGPEASTH DTEKISSFCE TLIEAKDDIN VKHGINTEAC STEEGVIDGN QSTLKSHEDV LDRTSTDCNA GEALLPKVME MDEILKTKTT INTSPGKLPV 0601: SWPTVADLSG CSEDMDCDED MDCDEDMDCI PSRNIPMMEV NTGFEERKSI NSSDGSLGYG GKDFQKPYLD ASIYFNREDP GDKVLAKSDI GGIEDDNKRI 0701: DKNVDSLSPE NDSSRGRPMG LDSPASLDIA NVSLDLANSN NSASGDLANA NSFTVGTYMN PMVTSPDKSV VFQMESKNLP HCKNTVNAPV ENVSGKGYME 0801: TTPLNVAAET ADNMDSEEGK QTCVNDTSSS LTKVGVKGSS NVLSVERTGG CSHSDESDLA MAVPSEGCME NVSTERLVPD EELILKSYHP AEIPCVDSGS 0901: DSRGLKTCLL EPNVSLSKDL TDCARESLVE QDVSQRSAIF CDKLPSLSAF VTETTLAIGI NGMSGNETVT DTESGLHEIQ PCTTVCKLSP EDRFGYGSSG 1001: AIGSVRSLSI DKNLEKDSSK VSSCLVSDNS VSPCHISPLV AVNEEIQNKI SVKANYSNSQ DGIKHKEDNC TESVEVETHE EKAKLPGGTS KYRTPVTNIT 1101: AGSGGDSLFL CDSLSSSRRR IRSEVHVSAV VDETSKGEEK SKPSGGIVAV RRDSVFPCDS LSSSPRLSRP LRSEIHVASM VDETSKSIEK IESSGGTSEH 1201: RTPETDIVAG SRDSVFPCNS LSNSQRLSFR QLRSEIHVAN MVDETNRVKE SQNGDSLLDT LQEQIMTSHE LTQPGSSAHC DLVMKPMGDP IAKLTDITSD 1301: VGSQEKDLRN IAKTDTFDGE AVSSDGQVSG TEIPGGSGVR VSRSYSHADV KFALTHVKEH VVSVPHRDPQ SKTSMNSKYE IEKRKKKPNY STQKSYPSSL 1401: PYVSDTKKDA NPPIHITKRH TWHRKSDASP SSFVAAKPLS STLSTQQKFP KVTAQSNNSY VRKGNSLLRK PSHGSPGAAL GIPPSAIQLN HFTVEDKSTG 1501: SSNMVDVDNA SSLVKTGEIA TLERQSKPPS DSSTSKLSNA IATSSGKCAL SYSTDHLTTG LPESIMDSAT SGEANFPHSG GDTLKTSDTL IQTGYASDCQ 1601: QKRNPSDLDS SNLKRMVYVK RKANQLVAAS DIHDVSQNQI PSSDGYFKRS KNQLVRNSES RCNQSISLPD DALDTRSAAN MVSERPSSSA FSDSAVMRPF 1701: KQSKFSLVWT QNDPQPRMPI AHMRNQNIVP QLVPWKRVTY WRRLMNSVSA FRNGSSLNIS RKLSMMRKRH TIYTRSTNGY SLRKSKVLSV GGSHLKWSKS 1801: IERDSRKANE EATLAVAAYS KKESEKQSGQ NNTSTASRNH LARERVFRFG SLRYKMDSSR RTLQRISDVD SPCSGPSENG KGVKRPFIPK RLVIGNEEYV 1901: RFGNGNQLVR DPKKRTRVLA NEKVRWSLHN ARLRLAKKKK YCQFFTRFGK CNKDDGKCPY VHDPSKIAVC TKFLNGLCAN ANCKLTHKVI PERMPDCSYY 2001: LQGLCNNEAC PYRHVHVNPI APICDGFLKG YCSEGDECRK KHSYNCPVFE ATGSCSQGLK CKLHHPKNQS KGRKRKRTNE PSQKNARRRY FSSLHNILSE 2101: SEPMVFNRRS TDSEVFGMES LDFITLGTAE YEAGDDNDPA TVQSISSDSE SLISIYNLIT PVALMQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)