AT1G21530.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:peroxisome 0.991 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : AMP-dependent synthetase and ligase family protein | ||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G21540.1); Has 77218 Blast hits to 70321 proteins in 3603 species: Archae - 1163; Bacteria - 50491; Metazoa - 3382; Fungi - 3676; Plants - 2327; Viruses - 1; Other Eukaryotes - 16178 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:7545151..7546936 | ||||||||||||
| Molecular Weight (calculated) | 60575.70 Da | ||||||||||||
| IEP (calculated) | 7.78 | ||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||
| Length | 547 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MELLLPHPSN STPLTVLGFL DRAASVYGDC PSILHTANTV HTWSETHNRC LRIASALTSS SIGIKQGQVV SVVGPNVPSV YELQFAVPMS GAILNNINPR 101: LDAHALSVLL RHSESRLVFV DHRSISLVLE AVSLFTQHEK PHLVLLDDDQ ENDSSSASDF LDTYEEIMER GNSRFKWIRP QTEWQPMVLN YTSGTTSSPK 201: GVVLSHRAIF MLTVSSLLDW SVPNRPVYLW TLPMFHANGW GYTWGTAAVG ATNICTRRVD APTIYNLIDK HNVTHMCAAP MVLNMLINYP LSTPLKNPVM 301: TSGAPPPATI ISRAESLGFN VSHSYGLTET SGPVVSCAWK PKWDHLDPLE RARLKSRQGV RTLGFTEVDV RDRKTGKSVK HDGVSVGEIV FRGSSVMLGY 401: YKDPQGTAAC MREDGWFYSG DIGVIHKDGY LEIKDRSKDV IICGGENISS AEIETVLYTN PVVKEAAVVA KPDKMWGETP CAFVSLKCDN NGDGSVPVTE 501: REIREFCKTK LPKYMVPRKV IFQEELPKTS TGKIQKFLLR QMAKTLS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)