AT1G21440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Phosphoenolpyruvate carboxylase family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Phosphoenolpyruvate carboxylase family protein; FUNCTIONS IN: isocitrate lyase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Isocitrate lyase/phosphorylmutase, conserved site (InterPro:IPR018523), Isocitrate lyase/phosphorylmutase (InterPro:IPR000918); BEST Arabidopsis thaliana protein match is: Phosphoenolpyruvate carboxylase family protein (TAIR:AT1G77060.1); Has 8771 Blast hits to 8771 proteins in 1489 species: Archae - 119; Bacteria - 4900; Metazoa - 32; Fungi - 522; Plants - 172; Viruses - 0; Other Eukaryotes - 3026 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:7502325..7504103 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 36308.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.18 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||||||
| Length | 336 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSMLMAAKST SLFSSNPTIS AKIGQNPRGV RSVYPTVRMQ SRVHRLIEEQ GAVLIPGVYD ALSAAIVQQT GFSAALISGY ALSAVTLGKP DFGLITPPEM 101: AATARSVCAA APKIPIIADA DTGGGNALNV QRTVKDLIAA GAAGCFLEDQ AWPKRCGHMR GKEVIPAEEH AAKIASARDA IGDADFFLIA RTDARALSAK 201: TGLSDAIDRA NLYMEAGADA SFVEAPRDDD ELKEIGRRTK GYRLCNMLEG GRTPLHTPDE LKEMGFHLIA HPLTSLYAST RALVDVLKIL KEKGTTKDHL 301: EKMITFEEFN RLVNLDSWYE LETKYSNLRN ALGETK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)