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AT1G21320.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : nucleotide binding;nucleic acid binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nucleotide binding;nucleic acid binding; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT1G21326.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWGXeggNOG:ENOG41127HCEMBL:AC036104EMBL:CP002684
EnsemblPlants:AT1G21320EnsemblPlants:AT1G21320.1EnsemblPlants:AT1G21320.2entrez:838729
ExpressionAtlas:F4HWF9Gene3D:3.30.70.330GeneID:838729Genevisible:F4HWF9
GO:GO:0000166GO:GO:0000398GO:GO:0016607GO:GO:0017069
hmmpanther:PTHR10501hmmpanther:PTHR10501:SF20InParanoid:F4HWF9InterPro:IPR000504
InterPro:IPR008889InterPro:IPR012677InterPro:IPR024888iPTMnet:F4HWF9
KEGG:ath:AT1G21320OMA:ADEYWNQPANTHER:PTHR10501PaxDb:F4HWF9
Pfam:PF00076Pfam:PF05678Pfscan:PS50102PIR:C86346
PRIDE:F4HWF9PROSITE:PS50102ProteinModelPortal:F4HWF9Proteomes:UP000006548
RefSeq:NP_001154354.1RefSeq:NP_173554.3SMART:SM00360SMR:F4HWF9
STRING:3702.AT1G21320.1SUPFAM:SSF54928TAIR:AT1G21320UniGene:At.64837
UniProt:F4HWF9
Coordinates (TAIR10) chr1:-:7462834..7465200
Molecular Weight (calculated) 46161.00 Da
IEP (calculated) 7.54
GRAVY (calculated) -0.78
Length 421 amino acids
Sequence (TAIR10)
(BLAST)
001: MDNRSPRSRG NMGPKPTPLK VRGDSHKIIK KPPLAPPHPQ PQPPQTHQQE PSQSRPPPGP VNIYTVTPRI IHTHPNNFMT LVQRLTGQTS TSTTSSSSSS
101: STSEPKDTST MVDTSHGLIS PAARFAVTEK ANISNELGTF VGGEGTMDQY YHHHHQEQPH QNRGFERPSF HHAGILSPGP YSLPSVSPDF FSTIGPTDPQ
201: EGTPYLIPSG DMHSYLSQDE DRGIPHSVKD TRSIGSAYDR YLQSMQTFFV PSEEAGPFNG VGMVRQGGSN MMPGPSMGEL MAGCGGSLPS DFRPNGRDMG
301: FGQLDSVGRP GREPHPLPPD VSNTLYVEGL PSNCSRREVS HIFRPFVGYR EVRLVTQDSK HRSGDPTVLC FVDFENSACA ATALSALQDY RMDEDEPDSK
401: ILRLQFFRNP GPRPGQRGGR R
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)