AT1G21200.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : sequence-specific DNA binding transcription factors | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
sequence-specific DNA binding transcription factors; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76870.1); Has 317 Blast hits to 297 proteins in 56 species: Archae - 2; Bacteria - 28; Metazoa - 67; Fungi - 2; Plants - 135; Viruses - 9; Other Eukaryotes - 74 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:7421483..7422814 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50936.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.29 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.15 | ||||||||||||||||||||||||||||||||
| Length | 443 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDGNFPQGGV VRSGASSYGG FDLQGSMRVH HQDSMNQQHR HNPNSRPLHE GLPFTMVTGQ TCDHHQNQNM SMSEQQKAER EKNSVSDDDE PSFTEEGGDG 101: VHNEANRSTK GSPWQRVKWT DKMVKLLITA VSYIGDDSSI DSSSRRKFAV LQKKGKWKSV SKVMAERGYH VSPQQCEDKF NDLNKRYKKL NDMLGRGTSC 201: QVVENPALLD SIGYLNDKEK DDVRKIMSSK HLFYEEMCSY HNGNRLHLPH DLALQRSLQL ALRSRDDHDN DDSRKHQMED LDDEDHDGDG DEHDEYEEQH 301: YAYGDCRVNH YGGGGGPLKK IRPSLSHEDG DHPSHVNSLE CNKVSLPQIP FSQADVNQGG AESGRAGSVQ KQWMESRTLQ LEEQKLQIQV ELLELEKQRF 401: RWQRFSKKRD QELERMRMEN ERMKLENDRM GLELKQRELG VEL |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)