AT1G21150.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Mitochondrial transcription termination factor family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Mitochondrial transcription termination factor family protein; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT5G07900.1); Has 922 Blast hits to 791 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 903; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:7406406..7407578 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44292.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.79 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.01 | ||||||||||||||||||||||||||||||||
| Length | 390 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSLLHCRNV VDCAFTSSTV RRIVNLGFLV GRIRTLCSVS QVKSENLEKQ KPCLESFTVS YLVDSCGLSL ESAKSNSRFV KLVSSKKPDS VLALFKDHGF 101: TNDQITSVIK SFPRVLSLSP EDVISPKLMF FSSIGFSTSD TAKMISSSPK MLSYSLHKRL IPCYDSLKSI LVEEESVVKC LKRGIRCFSL KITHCVSLRV 201: SICRELGVPD KSIKWLVQAS PFTFFSRERR FNEVLNRVCS YGFDPKKAGF VHAMVAFDCT SESAMERKFK LFQCFGWSKE DFVAAIMRFP NCVTVSDEKI 301: MYTLEYLVNN IGLQARDIVA RPVVLSLSME KRIKPRNQVI SLLLSKGLVK KEDINYFTIL KLKSSEFMDK FVLKYQDEMP QLVQPFTSNR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)