AT1G20940.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.910 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : F-box family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: SWI-SNF-related chromatin binding protein (TAIR:AT1G20240.1); Has 79 Blast hits to 74 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:7295274..7296518 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46627.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.26 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.03 | ||||||||||||||||||||||||||||||||||||
| Length | 414 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNNLPRNSQF DSSSIINDLP LDLLDEILFR LEPKSMAMMR CTNNSIKSYL SDPRFGPEYP SWVRPSLFNL GSYGATYVCC HPLVSSCDYM SPGNGVELFD 101: GSADCYIFGS CSGLLLLYIG CLFVANPLTK RFRILDHSGS KLIPMIVNGG LKGLSGISYP GGNVACTERA MCVGFAVNRN LTTKRFKIVG ILEMENVYGF 201: EINEGDSWRL SETSITTSSK SDLTTRMKPV YLDNTLHWLR NDGSIMSFNP ETEQACLIPS IFHREPDTKL LFAESVKINR LTLISGTIET ISVYTLVENH 301: KWTLTRRIKN ISIEEETLVY WNIAMYDGKC LVVRVKKMGL EPLASVLHVY DMEANSWGVL VSTLAWPNCV RDFYKLTPSL FFVEEDEQQK VLVASNDRRI 401: SYINSIMGLI DTTK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)