AT1G20750.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RAD3-like DNA-binding helicase protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RAD3-like DNA-binding helicase protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: DEAD2 (InterPro:IPR010614), Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type (InterPro:IPR014013), Helicase-like, DEXD box c2 type (InterPro:IPR006554), Helicase, ATP-dependent, c2 type (InterPro:IPR006555); BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein (TAIR:AT1G20720.1); Has 2571 Blast hits to 1958 proteins in 520 species: Archae - 146; Bacteria - 396; Metazoa - 797; Fungi - 439; Plants - 210; Viruses - 2; Other Eukaryotes - 581 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:7203302..7208998 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 127988.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.14 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1144 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASTRSKSDS KEEVKQTLNS KNPKNVYQIG GLQVEFPYQP YGTQLAFMSR VISTLDRAQR DGHSHALLES PTGTGKSLSL LCSVLAWQKS YKSRFPNGNL 0101: SHSKTQPSDI AGSSNVEPHE PQIPTIYYAS RTHAQITQVI REYRKTGYRV PMTVLGSRKR YCTNSHVQGK ENVDEKCRLL LKDKKNIKCA EFNGVGRILA 0201: YPSLQQTGHN GVHDIEDLVK IGKTVTGRLL KSFTVHSNME DIAREAGSIN LEEDIIFKLK NELEQMSEVE PEIYDSLYEV VEGLISWIGR KKDSLAKRDV 0301: DHYFSNWTGD RALKELKEFN ITRENFPNLK ACFNQAITKS EAAEIDPDKP YLSGISVSTL EELFATLTYF FSRNGSHVLD YEMGLQRSAK RGDNGWTNTF 0401: SLWCMNPSVV FKDLADLSLS IILTSGTLSP MNSFSSELGM QFGTCLEAPH VIDPNMQVWA GAISTVPGNY PLNASYRTAE AYAFQDALGK SLEEICTIVP 0501: GGSLVFFPSY KLMEKLCTRW HETGQWSRLC LKTDLFIEPR GGSKDDFETV LKEYYDSISG KNRLIGRNSS VKKAGSVITE AQDDSKRGSA FLAVCRGKVS 0601: EGMDFSDDNA RAVIIVGIPL PNLGDILVEL KRKYNDTNKS SKNLLGGSEW YCQQAYRALN QAAGRCIRHR FDYGAIIFLV IVALRLPTTK EQSVYFKVAK 0701: ASIKVYDNFE ASMEGLRYFF SSVKERVDSK MLESHEQNLS SENQRNEFVR KENQTQNKSS HVEPKQTIPA HTFIQVKREA ECCKGVIDLD CEVQPEPGYC 0801: EESSVTNCDE DPETSFVSGM INGIATARPC SSSKYESSSL ETGLRSLKSP DQFLKRHVSN ANFRRSPLGA ESSVTPERYS IGDMRNMTLE AESPLNMSVN 0901: SHVLKRRKFT TSPIIIDLEE ENSNAPDNRP EDHTSFTRRI EFGFPEVDQR VMRISCSLCR STLSHPENNS YPICMLTSSS KTYLLSLLKE TSGTGSAEMP 1001: TSVSVIMTDC SLVNQRLCTN SESSNGQGIW CQQDGCVFKT IFCPFCSVPN TCLGMQVMAT DSSNVQFMSK ILFFADHLEV TNDAASKETR LTHKSFFIQM 1101: PKDIISSAFG TSLLQVTTDF RPLKIAYGKE TVVQIGKLCS IDPT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)