AT1G20570.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.671 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Spc97 / Spc98 family of spindle pole body (SBP) component | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Spc97 / Spc98 family of spindle pole body (SBP) component; FUNCTIONS IN: transferase activity, transferring glycosyl groups, tubulin binding; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: spindle pole, microtubule organizing center; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: Spc97 / Spc98 family of spindle pole body (SBP) component (TAIR:AT1G80260.1); Has 1016 Blast hits to 914 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 582; Fungi - 173; Plants - 165; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:7122018..7126559 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 109217.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.45 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||
| Length | 976 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSESLLRIDH AGLDTLIPGM MCSHRVWTHS ELAPPSVSVN ESHLVKGLLQ ALQGFSSPFI FWDRKEQTFR AKSEIRVSHL SQSSLHVLLA GFLYAATCLK 101: LVESIVSGIN ASLKSPPTLM AFSNSASGWL EANIALNEEV KINDSNVAVT PTLLGLTSSL SSLCSDAEYL FQVVRGAIPH AYFESSSAIS TAEIAVHVLD 201: YLYKRLDEVC LVQGGELVAV EGFHMLLQIF AGSLLPYVES LDSWLFEGTL DDPFEELFFT ANQSVSVSDA EFWEKSYLLT RVLGPKSNVT SLNQKKGMSG 301: NDSNSVSDKD KEQNNRVLCP LFIKDICKSI VSAGKSLQLM QHIPSTSSEN CEKIQYHGRN GFGNSGCGIL LAGKNSFRSI ADLSLSEIFC LSLAGLIGHG 401: DHVSRYLWKD ETDEWEISPT LASYISGKLV NGTGDLLTYS ERMWYKLLVG AVQEKKSIEA KSELQSPCCV TCVKEEKNVL AAEKVLQGLF CHENLVVSAS 501: KMDLERNKNA WHVLNLSENY CLPSLNDKSL LSAVFEGSGV APKFVGTNYK YGFQFGRSEY LSSQDDTKIL ETLFPFPTLL PSFQSKLHMS EFLPYQKNST 601: LPSRVLSWIL RTEPRNTLLP VVIMQECFTI NIRRQVDNIS KVIFSKLMNE WKLMHELAVL RAIYLLGSGD LLQHFLTVIF DRLGKGESSN DDFELNIIIQ 701: ESIRNSADTM LLSSPDALVV SISSEGCLDR DKDDKGDVKS LSSPRESSVN NYAIDCLESL KFTYKVPWPL ELIANSEAIK KYNQVKRAKY VLDKARRLMW 801: KGKGSATKIR KHHCLLEQKL LNFVDAFHQY VMDRVYHTAW RELCEAMVKA GSLDEVIDVH ETYLLSIQRQ CFVVQEKLWA IIASRINMIL GLALEFYSIQ 901: QTLSSGGAVS AIKARWEMEI DRIEKQFEDC IAFLLRVLTS KKNVGHFPHL ADLVTRINYN YHYMSDTGSS MTASGS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)