AT1G20530.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.993 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF630 and DUF632) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF630 and DUF632); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, flower; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF630 and DUF632) (TAIR:AT2G17110.1); Has 3752 Blast hits to 2914 proteins in 298 species: Archae - 59; Bacteria - 209; Metazoa - 1260; Fungi - 213; Plants - 622; Viruses - 0; Other Eukaryotes - 1389 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:7108370..7110377 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 70901.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.46 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.75 | ||||||||||||||||||||||||||||
| Length | 614 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGCSPSKLDG LPAVSLCRDR CSSLEDTLRR SYALADAHSA YLLSLNTVGP ALHRFFQHAV ESPPDVESEA DESPETYSPE SCSSAHSVTS SDSDLPPKFD 101: SDCEEGEGTN CDLLSGSKPE SLNLNHDSFY SRRYESGTIT PPPPPPAPSN YAWDFINFFE SYELPYTTDV NDLKDRETTP SHEEDKLKKK KITVSQNDEK 201: IKVEEEKKTL RISEKNRKRA PKESKDQKVS SDLSEVTKQL QEMFKKASES GNDVSKMFDT SRFRYYQKSS VYQCNVRILL PSSNILYTKK VMTPFDPKPV 301: EESNFNNLSS TLKKLFMWEK KLYQEVKAEE KLRTSHMKNY KLLRRLEAKS ADLSKIEAIR SSIQCLSTRM RVSIHKINNI CLTINKLRDE ELWFQMKELI 401: HRLSEMWNSM LECHSRQSKV IAEAKKLDKM TIKENLDLSQ LELAMELKLE LRNWSLSMSN WIDAQAQYVK ALNNWLMRCL KQEPQEPTPD LSEEPPLFGA 501: INTWSQNLEI SHGEKEFTEA VYTILMHVNH QVEKQRMELE EQRNVNGSVK DIERKLMMLE KEEQKMQRKM KTVPSVALMG SLNLKSNMEQ IFKSMEKLAT 601: NSKQTYEELD LMCT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)