AT1G20400.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.815 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1204) | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1204 (InterPro:IPR009596); BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT2G15420.1); Has 2374 Blast hits to 2027 proteins in 308 species: Archae - 22; Bacteria - 170; Metazoa - 962; Fungi - 207; Plants - 198; Viruses - 74; Other Eukaryotes - 741 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:7072192..7075838 | ||||||||||||||||||||
| Molecular Weight (calculated) | 106513.00 Da | ||||||||||||||||||||
| IEP (calculated) | 7.38 | ||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||
| Length | 944 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESAVQVNGF HPHREITSQG GVNGCVNARI KQVRGATRRC RFELVVLVSW LFWASWLIFD EQTSLDELTC IDELALPGEL TCAILSPGPE KRPFSRDFLF 101: LIYTRPYSRV RKISETDAPV ASSFSMQRVD PTCLLIRALG FLRIRKLKRS LSDHRRSRTP DGSSERSGAD RFRAESLDDD LVEAGYSSSG SSSRTSVVAE 201: LRRRISSPLV DRAETGAAAT TTFKPRLTDE EIGDEDFKEA IASEEIAIFE PRSAVGGGFG DDVKEMTVSD EIGVFPGVSG PKPGSADYLG PTKTSASSMS 301: TALRFCNAPR GLVARVPETH ERPWTTPEGY MCVYEKFLTE CGLSFPIPIF LLGFVARRKM ALSQLTVAAI RYAVGLIRLA EQCGVEVRRS HYEEVINLKR 401: IGSARPGFYY AQSATKPKII TGVKSKTNDW CFEYFFVKVT KESVGDHEMV DLSEWRMTPV RRLKILDPFP EELKEDLLKI RAVSPYVWPT GEEKERLSLH 501: KPKKARKTPA KRKMKMNTEE VGSYSSRYKR QKTSALKESQ EKDHLPSGED RAARSVEEER RTARSEPPRG HQGRSVVNPG SSVDRSKETR EKELATARQG 601: KQLEGSARSD VPPGCNTLIV HPGPANDPHR RRSSGAIEEI RSDARVSKQP DYRWEHYYSG REVKELKEMK AFTDVARKTL DAVGSMNRLA YLYERRFRNM 701: EVLGSQDLRG ELSAEKKKND ELLKKLESAS KEAAHLKSEV ATLAYQRTVM GEERDRCTLD LEKEREKTVE LEDRLKSEKK RLRSRREKYA ENQTSKALIH 801: VADLFQARMN RVKAHLDDKL KINPKFLDYN QVCGNVALLD ELVEAGEIEI KSTELMPRLI ADRDALKAEV EGFEITEIEK DDFDVWTLFE KVLEEEHFEP 901: SASGGHSETE AEKDEETSVE DASQRKPETP GPLPDDPAAA PVPE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)