AT1G20380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Prolyl oligopeptidase family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Prolyl oligopeptidase family protein; FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase, catalytic domain (InterPro:IPR001375), Peptidase S9A, oligopeptidase, N-terminal beta-propeller (InterPro:IPR004106), Peptidase S9A, prolyl oligopeptidase (InterPro:IPR002470); BEST Arabidopsis thaliana protein match is: Prolyl oligopeptidase family protein (TAIR:AT1G76140.1); Has 7989 Blast hits to 7898 proteins in 1359 species: Archae - 93; Bacteria - 3809; Metazoa - 313; Fungi - 45; Plants - 231; Viruses - 0; Other Eukaryotes - 3498 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:7061665..7065047 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 82491.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.14 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 731 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGSLPAFEER LQYPTARRDE SVVEDYHGVK VSDPYRWLED PDAEEVKEFV EKQVQLSDSV LKSCETKEKL HDKFTKFIDY PRFDTPFKRG NSYFYFHNSG 101: LQAQSVLHVQ DDLESEAEIL LDPNTLSDDG TVSLNTLSIS EDAKYLAYGL SSSGSDWVTI KVMKIEDKKV EPDSLSWVKF SGITWTHDGK GFFYSRYPAP 201: REGEKIDAGT ETNSNLYHEL YYHFLGTDQS EDVLCWRDQD NPKHMFGSKV TDDGKYLIMS IEEGCDPVNK VYHCDLSLLP KGLEGFRGSN TLLPFVKLID 301: TFDAQYIAIA NDETLFTFLT NKDAPKYKVV RVDLKEPSSW TDVIAEHEKD VLSTASAVNG DQLVVSYMSD VKHILQIRDL KSGSLLHGLP VDIGSVCGVF 401: ARRKDTTFFF RFTSFLTPGV IYICDLSHEA PEVTVFREIG VPGFDRTAFQ VTQVFYPSKD GTDIPMFIVA RKDIKLDGSH PCLLYAYGGF SISMTPFFSA 501: TRIVLGRHLG TVFCFANIRG GGEYGEEWHK SGALANKQNC FDDFISGAEY LVSAGYTQPR KLCIEGGSNG GILVGACINQ RPDLFGCALA HVGVMDMLRF 601: HKFTIGHAWT SEFGCSDKEE EFHWLIKYSP LHNVKRPWEQ KTDLFFQYPS TMLLTADHDD RVVPLHSYKL LATMQYELGL SLENSPQTNP IIARIEVKAG 701: HGAGRPTQKM IDEAADRYSF MAKMVDASWI D |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)