AT1G20135.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : GDSL-like Lipase/Acylhydrolase family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
GDSL-like Lipase/Acylhydrolase family protein; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, flower, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT5G63170.1); Has 3502 Blast hits to 3463 proteins in 221 species: Archae - 0; Bacteria - 352; Metazoa - 0; Fungi - 12; Plants - 3126; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:6984124..6985498 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 35948.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.00 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.08 | ||||||||||||||||||||||||||||||||||||
| Length | 328 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MENANIKVLV VLLSIWISCV QAQTGTFSAV LAFGDSILDT GNNNLLMTVS RGNFLPYGRD FPHRIPTGRF GNGRVLSDLV ASGLGVKDLL PAFRSPFLKN 101: SELATGVCFA SGGSGLDKFT ASIQGVIWVQ DQVSDFQRYL EKLNQQVGDA AKVKEIIANA VILVSAGNND LAITYFSTPK RQTRYTVQAY TDMLIGWKTT 201: FINSLYDLGA RKFAILGTLP LGCLPGARQI TGNLICLPNV NYGARVYNDK VANLVNQYNQ RLPNGKFVYI DMYNSLLEVI NNPSQYGFTT AKPCCCSVMT 301: PIPCLRSGSH VFWDFAHPSE KAYKTVLP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)