AT1G20130.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.945 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: structural constituent of cell wall, lipase activity, hydrolase activity, acting on ester bonds; INVOLVED IN: lipid metabolic process; CONTAINS InterPro DOMAIN/s: Pistil-specific extensin-like protein (InterPro:IPR003882), Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G20132.1). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:6977781..6980003 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55727.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.14 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.50 | ||||||||||||||||||||||||||||||||||||
| Length | 514 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEEALRHSKT MKRSSLVMHR RLWPWPLWPR PYPQPWPMNP PTPDPSPKPV APPGPSSKPV APPGPSPCPS PPPKPQPKPP PAPSPSPCPS PPPKPQPKPV 101: PPPACPPTPP KPQPKPAPPP EPKPAPPPAP KPVPCPSPPK PPAPTPKPVP PHGPPPKPAP APTPAPSPKP APSPPKPENK TIPAVFFFGD SVFDTGNNNN 201: LETKIKSNYR PYGMDFKFRV ATGRFSNGMV ASDYLAKYMG VKEIVPAYLD PKIQPNDLLT GVSFASGGAG YNPTTSEAAN AIPMLDQLTY FQDYIEKVNR 301: LVRQEKSQYK LAGLEKTNQL ISKGVAIVVG GSNDLIITYF GSGAQRLKND IDSYTTIIAD SAASFVLQLY GYGARRIGVI GTPPLGCVPS QRLKKKKICN 401: EELNYASQLF NSKLLLILGQ LSKTLPNSTF VYMDIYTIIS QMLETPAAYG FEETKKPCCK TGLLSAGALC KKSTSKICPN TSSYLFWDGV HPTQRAYKTI 501: NKVLIKEYLH VLSK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)