AT1G20130.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: structural constituent of cell wall, lipase activity, hydrolase activity, acting on ester bonds; INVOLVED IN: lipid metabolic process; CONTAINS InterPro DOMAIN/s: Pistil-specific extensin-like protein (InterPro:IPR003882), Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G20132.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:6977939..6980003 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 58010.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.06 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 534 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKRSSLVDSC SYSRIFRSIF CLLSFCIFFL TTTNAQVMHR RLWPWPLWPR PYPQPWPMNP PTPDPSPKPV APPGPSSKPV APPGPSPCPS PPPKPQPKPP 101: PAPSPSPCPS PPPKPQPKPV PPPACPPTPP KPQPKPAPPP EPKPAPPPAP KPVPCPSPPK PPAPTPKPVP PHGPPPKPAP APTPAPSPKP APSPPKPENK 201: TIPAVFFFGD SVFDTGNNNN LETKIKSNYR PYGMDFKFRV ATGRFSNGMV ASDYLAKYMG VKEIVPAYLD PKIQPNDLLT GVSFASGGAG YNPTTSEAAN 301: AIPMLDQLTY FQDYIEKVNR LVRQEKSQYK LAGLEKTNQL ISKGVAIVVG GSNDLIITYF GSGAQRLKND IDSYTTIIAD SAASFVLQLY GYGARRIGVI 401: GTPPLGCVPS QRLKKKKICN EELNYASQLF NSKLLLILGQ LSKTLPNSTF VYMDIYTIIS QMLETPAAYG FEETKKPCCK TGLLSAGALC KKSTSKICPN 501: TSSYLFWDGV HPTQRAYKTI NKVLIKEYLH VLSK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)