AT1G20020.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ferredoxin-NADP(+)-oxidoreductase 2 | ||||||||
| Curator Summary (TAIR10) |
Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the stroma | ||||||||
| Computational Description (TAIR10) |
LEAF FNR 2 (ATLFNR2); FUNCTIONS IN: oxidoreductase activity, poly(U) RNA binding, NADPH dehydrogenase activity; INVOLVED IN: oxidation reduction, defense response to fungus, incompatible interaction, defense response to bacterium; LOCATED IN: thylakoid, chloroplast thylakoid membrane, apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), Ferredoxin--NADP reductase (InterPro:IPR012146); BEST Arabidopsis thaliana protein match is: ferredoxin-NADP(+)-oxidoreductase 1 (TAIR:AT5G66190.1); Has 6542 Blast hits to 6542 proteins in 1635 species: Archae - 18; Bacteria - 3429; Metazoa - 796; Fungi - 693; Plants - 607; Viruses - 0; Other Eukaryotes - 999 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:6942851..6944868 | ||||||||
| Molecular Weight (calculated) | 39235.10 Da | ||||||||
| IEP (calculated) | 8.69 | ||||||||
| GRAVY (calculated) | -0.41 | ||||||||
| Length | 350 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MATTMNAAVS LTSSNSSSFP ATSCAIAPER IRFTKGAFYY KSNNVVTGKR VFSIKAQITT ETDTPTPAKK VEKVSKKNEE GVIVNRYRPK EPYTGKCLLN 101: TKITADDAPG ETWHMVFSHQ GEIPYREGQS VGVIADGIDK NGKPHKVSLC VKRLVYTNDQ GETVKGVCSN FLCDLAPGSD VKLTGPVGKE MLMPKDPNAT 201: VIMLATGTGI APFRSFLWKM FFEKHDDYKF NGLAWLFLGV PTTSSLLYQE EFDKMKAKAP ENFRVDYAIS REQANDKGEK MYIQTRMAQY AAELWELLKK 301: DNTFVYMCGL KGMEKGIDDI MVSLAANDGI DWFDYKKQLK KAEQWNVEVY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)