AT1G19780.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.995 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : cyclic nucleotide gated channel 8 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
member of Cyclic nucleotide gated channel family | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
cyclic nucleotide gated channel 8 (CNGC8); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: cyclic nucleotide gated channel 7 (TAIR:AT1G15990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:6833885..6836578 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 85987.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.31 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 753 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MYKSQYISGH REKFVRLDDT DSRVSMSSNA TGMKKRSCFG LFNVTSRGGG KTKNTSKSFR EGVKIGSEGL KTIGKSFTSG VTRAVFPEDL RVSEKKIFDP 101: QDKTLLLWNR MFVISCILAV SVDPLFFYLP IVDNSKNCIG IDSKLAVTTT TLRTIIDVFY LTRMALQFRT AYIAPSSRVF GRGELVIDPA KIAERYLTRY 201: FIVDFLAVLP LPQIAVWKFL HGSKGTDVLP TKQALLHIVI TQYIPRFVRF IPLTSELKKT AGAFAEGAWA GAAYYLLWYM LASHITGAFW YMLSVERNDT 301: CLRSACKVQP DPKVCVQILY CGSKLMSSRE TDWIKSVPDL FKNNCSAKSD ESKFNYGIYS QAVSSGIVSS TTFFSKFCYC LWWGLQNLST LGQGLQTSTY 401: PGEVLFSIAI AVAGLLLFAL LIGNMQTYLQ SLTVRLEEMR IKRRDSEQWM HHRSLPQNLR ERVRRYDQYK WLETRGVDEE NIVQSLPKDL RRDIKRHLCL 501: NLVRRVPLFA NMDERLLDAI CERLKPSLYT ESTYIVREGD PVNEMLFIIR GRLESVTTDG GRSGFFNRGL LKEGDFCGEE LLTWALDPKA GSNLPSSTRT 601: VKALTEVEAF ALEAEELKFV ASQFRRLHSR QVQQTFRFYS QQWRTWAACF IQAAWRRHLR RKIAELRRKE EEEEEMDYED DEYYDDNMGG MVTRSDSSVG 701: SSSTLRSTVF ASRFAANALK GHKLRVTESS KSLMNLTKPS EPDFEALDTD DLN |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)