AT1G19460.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.901 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Galactose oxidase/kelch repeat superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G19470.1); Has 1605 Blast hits to 1542 proteins in 141 species: Archae - 4; Bacteria - 96; Metazoa - 403; Fungi - 4; Plants - 1026; Viruses - 35; Other Eukaryotes - 37 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:6738484..6739734 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47187.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.24 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||||||
| Length | 416 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MANISEISGD SNDGGDPNKK PEEQVLRRSR RIATRNENQN KKPKEEEEKD NRSVSFPIPN ELTEACVALI RKCDYPSLSS VSSYFFNLIA SSELYETRSR 101: LGLSETFLYA AIRFPDTNPP NWYILHRNKV SSLRLSKLES LPPVPYGCSV VTIGQEMYVI GGLLDVRRLQ LMTLIDCRTH KCRSLPKMKR GRYHAAAGVF 201: DGKIYVIGGF RMRKPDAEWI EVFDLKKQIW ESLPGPYPKT SMDSQFFAHA VMEDKLYILG SRCLIYEPKR NGEWDATVNA NPIWNLWKVP CTMQCVIDDM 301: LYTIDPQCTL GHPIVVYNPK DKTWRPVKGE SLRTLPSYFV SDGSEMANFG GKLVILGSNG SCYDTGDCIG EKGIWCVMIE LEKREGGEIW GKVESLDCVL 401: GDINFLSVWL CQTLTL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)