AT1G19410.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.794 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : FBD / Leucine Rich Repeat domains containing protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FBD / Leucine Rich Repeat domains containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: Protein with RNI-like/FBD-like domains (TAIR:AT5G62970.1); Has 783 Blast hits to 763 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 783; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:6714492..6716439 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49306.50 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.91 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.16 | ||||||||||||||||||||||||||||
| Length | 435 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEKINTDDLL VKILSFLPTK VAVTTSILSK RGSFFGCGTL PLHRVPVLES LPLKFSTLPF QPEDIKLCVE AAVSHCVREL FIDYYPHPYK FATLPFCVYT 101: CKSLETLALS YAILMVVPRM ACLPSLKNLL LQGVRYVDES FQLLDESHTV CFPSLKSLHL KEVISSDERY LRSLLANCPV LEELVMELDE YDTLGAVHII 201: VPSLKSLSLD IDCDRSSNVV EIVAPSLEYI KLNDHSDNKF LIENMPKLEE AYIDANIFEY EKFLGAFTSV KRLRASPSIV SGRISGDGLN LCLMLQRSEA 301: RNVSAICFNQ LESLKICTCK PYWSIILLRL LKGSPNLKVL ELTDNKMPLC FKDPLVCWDQ VTPVPECLLT SLETFKWTDL PPRQEARDMR TVLVLKNEMV 401: KLLDDKIVRS ERKEHIIFFF AITVSDIYVS SSSSP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)