AT1G19290.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
Arabidopsis cell culture (mitochondrial marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; LOCATED IN: mitochondrion; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G55840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:6666249..6668963 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 101866.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.41 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.03 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 904 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLRRSPARVV AYQLLPFLYT RSFSEASRTL RRELRGGNGR IRPELLERVS RLLVLGRYEA LHDLSLDFSD ELLNSILRRL RLNPEACLEI FNLASKQQKF 101: RPDYKAYCKM VHILSRARNY QQTKSYLCEL VALNHSGFVV WGELVRVFKE FSFSPTVFDM ILKVYAEKGL VKNALHVFDN MGNYGRIPSL LSCNSLLSNL 201: VRKGENFVAL HVYDQMISFE VSPDVFTCSI VVNAYCRSGN VDKAMVFAKE TESSLGLELN VVTYNSLING YAMIGDVEGM TRVLRLMSER GVSRNVVTYT 301: SLIKGYCKKG LMEEAEHVFE LLKEKKLVAD QHMYGVLMDG YCRTGQIRDA VRVHDNMIEI GVRTNTTICN SLINGYCKSG QLVEAEQIFS RMNDWSLKPD 401: HHTYNTLVDG YCRAGYVDEA LKLCDQMCQK EVVPTVMTYN ILLKGYSRIG AFHDVLSLWK MMLKRGVNAD EISCSTLLEA LFKLGDFNEA MKLWENVLAR 501: GLLTDTITLN VMISGLCKME KVNEAKEILD NVNIFRCKPA VQTYQALSHG YYKVGNLKEA FAVKEYMERK GIFPTIEMYN TLISGAFKYR HLNKVADLVI 601: ELRARGLTPT VATYGALITG WCNIGMIDKA YATCFEMIEK GITLNVNICS KIANSLFRLD KIDEACLLLQ KIVDFDLLLP GYQSLKEFLE ASATTCLKTQ 701: KIAESVENST PKKLLVPNNI VYNVAIAGLC KAGKLEDARK LFSDLLSSDR FIPDEYTYTI LIHGCAIAGD INKAFTLRDE MALKGIIPNI VTYNALIKGL 801: CKLGNVDRAQ RLLHKLPQKG ITPNAITYNT LIDGLVKSGN VAEAMRLKEK MIEKGLVRGS DKQGDVDIPK EVVLDPEVKL GSTGVIEMNS NELYDVRRVS 901: EAVV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)