AT1G19260.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.932 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TTF-type zinc finger protein with HAT dimerisation domain | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TTF-type zinc finger protein with HAT dimerisation domain; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, TTF-type (InterPro:IPR006580); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09660.1); Has 1044 Blast hits to 976 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 607; Fungi - 1; Plants - 428; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:6657260..6659569 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 88966.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.77 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||
| Length | 769 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYRFLKRKSP PPPDINLNEL PSDPAKRKSI LSYHPNQRDE VRREYLIRGP CQPRGHKFKQ IAIGKVLRRF NPKWFDLYGD WLEYSVEKEK AFCLYCYLFR 101: DQTGNQGGSD SFLSTGFCSW NKADRLDQHV GLDVNSFHNN AKRKCEDLMR QGQSIKHALH KQTDVVKNDY RIWLNASIDV SRHLLHQGLP FRGHDESEES 201: TNKGNFVELL KYTAGQNEVV KKVVLKNAPK NNQMTSPPIQ KDIVHCFSKE VTRSIIEEMD NDVFGLLVDE SADASDKEQM AVVFRFVDKY GVVKERFIGV 301: IHVQETSSLS LKSAIDSLFA KYGLSLKKLR GQGYDGASNM KGEFNGLRSL ILKESSSAYY VHCFAHQLQL VVMAVAKKHV EVGEFFYMIS VLLNVVGASC 401: KRKDKIREIH RQKVEEKISN GEIKTGTGLN QELSLQRPGN TRWGSHYKTL LRLEELFSSI VIVLEYIQDE GTDTTKRQQA YGILKYFHTF DFVFYLELML 501: LVMGLTDSLS KALQRKDQDI LNAISLVKTT KCQLQKVRDD GWDAFMAKVS SFSEKNNTGM LKMEEEFVDS RRPRKKTGIT NLHHYKVDCF YTVLDMQLQE 601: FNDRFDEVNS ELLICMSSLS PIDSFRQFDK SMLVRLTEFY PDDFSFVERR SLDHQLEIYL DNVKNDERFT DLKCLGDLAR VMVETRKHLS HPLVYRLLKV 701: SLILPVATAT VERCFSAMNF VKTTLRNRIG DMFLSDCLVC FIEKQALNTV TNESVIKRFQ DMSERRVHL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)