AT1G18910.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc ion binding;zinc ion binding | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
zinc ion binding;zinc ion binding; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CTCHY-type (InterPro:IPR017921), Zinc finger, CHY-type (InterPro:IPR008913), Zinc finger, RING-type (InterPro:IPR001841), Haemerythrin/HHE cation-binding motif (InterPro:IPR012312); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G74770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:6532706..6537993 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 144100.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.68 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1254 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGVGDPLPLP PEKNRREVNK PPDIASTSSS SASAVNNARL SDAPILLFVY FHKAFRAQLA ELQFLAGDTV RSGSDLAVEL RSKFEFLKLV YKYHSAAEDE 0101: VIFSALDTRV KNIVFNYSLE HDATDDLFTS VFHWLNVLEE EQGNRADVLR EVVLCIGTIQ SSICQHMLKE ERQVFPLMIE NFSFEEQASL VWQFICSVPV 0201: MVLEEIFPWM TSLLSPKEKS EVETCFKEVV PNELSLQLVI NSWLIDDSQS SLTALTKIMK GVQSVEVSEN MTNSQTNSSS SGVFQRFWQW SKKMSFSSPN 0301: TGHILVHGIH LWHNAIRKDL VDIQKGLCQL TFPSLSLDLN VLVVRLNFLA DVLIFYSNAF KTFFYPVFED MVDQQHSSSS KQFTIDGHVE NFKKSLDLET 0401: RAGSDNFVIT LQEKLESLIL TVAKQFSIEE TEVFPIISKN CNIEMQRQLL YRSIHFLPLG LLKCVIMWFS AQLPEDECQS IIHYLSSEDS FPNKPFAHLL 0501: LQWFRFGYSG KTPVESFWNE LSFMFKPRCS FEEELTEEAS GSFFQQSPQK LFKVSDPYSM DPPAGYMNET PYSSAMNQQI LIPGKLRPLL HLPDLFGDKT 0601: IGEHLTMDLK PIDLIFYFHK AMKKDLDYLV RGSARLATDY SFLGEFQQRF HLIKFLYQIH SDAEDEIAFP ALEAKGKLQN ISQSYSIDHE LEVEHLNKVS 0701: FLLNELAELN MLVLDHKNVK YEKLCMSLQD ICKSIHKLLS EHLHREETEL WCLFRDCFTI EEQEKIIACM LGRISGEILQ DMIPWLMESL IPDEQHAVMS 0801: LWRQATRKTM FGEWLTEWYN SHAVEEETEE ANKDPSENSD PLDVVWSYLF EGAADEYKGS ICSKPLEETE LKGIMNKPLG KAAPNNKVEF GNKEENHLEI 0901: SGSKKVCTGA DETKYKEQTD SNAQAFQMSH NTSQSGQDSR YECLLSMSQE DVEATIRRIS RDSSLDPQKK SYIIQNLLMS RWIATQRIYN LEPSILSSNR 1001: EAVPGQNPSY RDPHKLIFGC KHYKRSCKLL APCCNKLYTC IRCHDEEVDH LLDRKQITKM MCMKCMIIQP VGASCSNISC SSSMGKYYCK ICKLFDDDRE 1101: IYHCPYCNLC RLGKGLSIDY FHCMKCNACM SRLIVEHVCR EKCLEDNCPI CHEYIFTSNS PVKALPCGHV MHSTCFQEYT CSHYTCPICS KSLGDMQVYF 1201: RMLDALLAEQ KMPDEYLNQT QVILCNDCGR KGNAPYHWLY HKCSSCASYN TRLF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)