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AT1G18900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G74750.1); Has 53451 Blast hits to 14715 proteins in 301 species: Archae - 4; Bacteria - 60; Metazoa - 600; Fungi - 788; Plants - 50339; Viruses - 0; Other Eukaryotes - 1660 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC068602EMBL:AK117464
EMBL:BT005012EMBL:CP002684EnsemblPlants:AT1G18900EnsemblPlants:AT1G18900.1
EnsemblPlants:AT1G18900.2entrez:838471ExpressionAtlas:Q8GYP6Gene3D:1.25.40.10
GeneID:838471Genevisible:Q8GYP6hmmpanther:PTHR24015hmmpanther:PTHR24015:SF268
HOGENOM:HOG000244210InParanoid:Q8GYP6InterPro:IPR002625InterPro:IPR002885
InterPro:IPR011990iPTMnet:Q8GYP6ncoils:CoilPaxDb:Q8GYP6
Pfam:PF01535Pfam:PF12854Pfam:PF13041Pfam:Q8GYP6
Pfscan:PS50828Pfscan:PS51375PhylomeDB:Q8GYP6PRIDE:Q8GYP6
PRO:PR:Q8GYP6PROSITE:PS50828PROSITE:PS51375ProteinModelPortal:Q8GYP6
Proteomes:UP000006548RefSeq:NP_173324.1RefSeq:NP_973860.1SMART:SM00463
SMR:Q8GYP6STRING:3702.AT1G18900.3SUPFAM:0053808SUPFAM:SSF160443
SUPFAM:SSF48452TAIR:AT1G18900TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.15067UniGene:At.50934UniGene:At.68985UniProt:Q8GYP6
Coordinates (TAIR10) chr1:+:6529778..6532360
Molecular Weight (calculated) 95219.00 Da
IEP (calculated) 8.90
GRAVY (calculated) -0.32
Length 860 amino acids
Sequence (TAIR10)
(BLAST)
001: MIRAKHISNL SSTARSFFLN GSRTSVTDGN SCVYSDDENC VSKRQQLRKE AGQTEKRPSS ILPKPSVVGC ILPGEVTKPV VPKKVDDFGR PSLLPQHVSS
101: SPALPLKSHS VNYASTVVRE EVEGKASSEP IGDQIFKAGI VAVNFLSDLS NCKIPSYDGG SDAFGLPKSC MVDPTRPISS VKSSNVKAIR REHFAKIYPR
201: SAAKESSVGT TRNPSSNFRG AKEAERTGFV KGFRQVSNSV VGKSLPTTNN TYGKRTSVLQ RPHIDSNRFV PSGFSNSSVE MMKGPSGTAL TSRQYCNSGH
301: IVENVSSVLR RFRWGPAAEE ALQNLGLRID AYQANQVLKQ MNDYGNALGF FYWLKRQPGF KHDGHTYTTM VGNLGRAKQF GAINKLLDEM VRDGCQPNTV
401: TYNRLIHSYG RANYLNEAMN VFNQMQEAGC KPDRVTYCTL IDIHAKAGFL DIAMDMYQRM QAGGLSPDTF TYSVIINCLG KAGHLPAAHK LFCEMVDQGC
501: TPNLVTYNIM MDLHAKARNY QNALKLYRDM QNAGFEPDKV TYSIVMEVLG HCGYLEEAEA VFTEMQQKNW IPDEPVYGLL VDLWGKAGNV EKAWQWYQAM
601: LHAGLRPNVP TCNSLLSTFL RVNKIAEAYE LLQNMLALGL RPSLQTYTLL LSCCTDGRSK LDMGFCGQLM ASTGHPAHMF LLKMPAAGPD GENVRNHANN
701: FLDLMHSEDR ESKRGLVDAV VDFLHKSGQK EEAGSVWEVA AQKNVFPDAL REKSCSYWLI NLHVMSEGTA VTALSRTLAW FRKQMLASGT CPSRIDIVTG
801: WGRRSRVTGT SMVRQAVEEL LNIFGSPFFT ESGNSGCFVG SGEPLNRWLL QSHVERMHLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)