AT1G18830.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.677 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transducin/WD40 repeat-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G63460.1); Has 13982 Blast hits to 10894 proteins in 455 species: Archae - 16; Bacteria - 1751; Metazoa - 4952; Fungi - 3516; Plants - 1949; Viruses - 0; Other Eukaryotes - 1798 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:6489309..6494218 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 106599.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.68 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.38 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 969 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDCIKSIGRS AFVAIAPESP FIAAGTMAGA VDLSFSSSAN LEIFELDFQS NDRELKLVGQ CQSSERFNRL AWGSYGSGSD GLIAGGLVDG NIGLWNPISS 101: ESGEIAHVRD LSKHKGPVRG LEFNVKSPNQ LASGADDGTV CIWDLANPSK PSHYLKGTGS YMQSEISSLS WNKGFQHVLA STSHNGTTVI WDVNNEKIIT 201: DLKTTVRCSV LQWDPDHFNQ ILVASDEDSS PNVKLLDIRY LQSPVRTFVG HQRGVIAMEW CPSDSLYLLT CGKDNRTICW NTKTGKIVAE LPTGQNWNFD 301: VHWYPKMPGV ISASSVDGKI GIYNLEGCSS YGTENQQHFL FHLLDADPLT APKWWKRPAG ASFGFGGKLI SFNKNLPEAS EVFLHSLATE KSLVNRISKF 401: EAALENGEKT SLRGLCEKKT EEAESEEEKE TWGLLKIMLE EDGNAKTKLR SHLGFSLPSE ENDQTANEPH ATCSSTNVEE TQKVPEPEGE EEESSDPTFD 501: DAIQRSLIVG DYKEAVAQCF SANKMADALV IAHVGGTELW ESTRDKYIRM SNAPYMKVVS AMMNNDLMTY LHTRQPKSWK ETLALICTFA EGDEWISLCD 601: ALASNLMAAG FTLAATLCYI CAGNVDKTVD IWSMSLEKQS AGKSYAECVQ DLMEKTLVLA LTTCNKRVSA SLRKLFESYA EILASQGLIA TAMKFLKLLE 701: SGDFSPELSI LRDRISLYAE PEAANTSAST NTQPKISNPY QEKSFTPAPL SNAQPSRSIT FFPLNPPREL KNADQYQQPT MDYHSFNRSA GPAYNAPPGP 801: GSYRSIHSQV GPYINSKIPQ TVAPPVRPMT PTHQVAVQPE PVAPPPTVQT ADTSNVPAHQ KPIVASLTRL FKETFEPLRG YSRDTPAKKR EAEDNCSRKL 901: GALFSKLNNG DISKNAAEKL TQLCQALDKR DFGAALKIQG LMTSTEWDEC SSWLPTLKKM IVTGRQNVR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)