AT1G18720.1::SUBA5

AT1G18720.1

Subcellular Consensus
(Prediction and Experimental)

min:

:max

SUBAcon:
vacuole 0.749
What is SUBAcon?

Predictors

External Curations

no data

Experimental Localisations and PPI

FP	MS/MS	PPI
	PMID:31520498 (2020): mitochondrion	PMID:24833385 (2014): AT3G12180.1:None: PMID:24833385 (2014): AT2G26180.1:None: PMID:24833385 (2014): AT2G22425.1:None: PMID:24833385 (2014): AT1G14700.1:None: PMID:24833385 (2014): AT4G20790.1:None: PMID:24833385 (2014): AT5G59650.1:None: PMID:24833385 (2014): AT1G29060.1:None: PMID:24833385 (2014): AT1G59730.1:None: PMID:24833385 (2014): AT4G30850.1:None: PMID:24833385 (2014): AT3G17210.1:None: PMID:21798944 (2011): AT3G60600.1:None: PMID:21798944 (2011): AT5G22290.1:None:

SUBAcon links
AGI-AGI relationships

Coexpression	PPI
AT5G19590.1 extracellular [7.77] AT5G19860.1 extracellular [7.27] AT1G65720.1 plasma membrane [7.06] AT1G16180.1 endoplasmic reticulum [6.6] AT5G20650.1 vacuole [6.48] AT1G05940.1 vacuole [6.3] AT4G36195.1 vacuole [5.97] AT3G62580.1 endoplasmic reticulum [5.85] AT3G06170.1 vacuole [5.77] AT2G20230.1 plasma membrane [5.63]	AT3G17210.1 cytosol AT2G22425.1 endoplasmic reticulum AT3G12180.1 endoplasmic reticulum AT1G14700.1 extracellular AT1G29060.1 golgi AT1G59730.1 golgi AT4G30850.1 golgi AT2G26180.1 nucleus AT5G22290.1 nucleus AT4G20790.1 plasma membrane AT5G59650.1 plasma membrane AT3G60600.1 endoplasmic reticulum, plasma membrane

Description (TAIR10)

protein_coding : Protein of unknown function (DUF962)

Curator
Summary (TAIR10)

Computational
Description (TAIR10)

Protein of unknown function (DUF962); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF962 (InterPro:IPR009305); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF962) (TAIR:AT1G74440.1); Has 638 Blast hits to 636 proteins in 299 species: Archae - 0; Bacteria - 335; Metazoa - 3; Fungi - 143; Plants - 88; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).

Protein Annotations

eggNOG:COG4539	eggNOG:KOG3292	EMBL:AC011809	EMBL:AY054209
EMBL:AY066034	EMBL:CP002684	EnsemblPlants:AT1G18720	EnsemblPlants:AT1G18720.1
entrez:838454	GeneID:838454	GO:GO:0016021	Gramene:AT1G18720.1
hmmpanther:PTHR28026	hmmpanther:PTHR28026:SF4	HOGENOM:HOG000263779	IntAct:Q9M9U3
InterPro:IPR009305	KEGG:ath:AT1G18720	ncoils:Coil	OMA:FFVHLEI
Pfam:PF06127	PhylomeDB:Q9M9U3	PIR:A86321	Proteomes:UP000006548
RefSeq:NP_564061.1	STRING:3702.AT1G18720.1	TAIR:AT1G18720	TMHMM:TMhelix
UniGene:At.11916	UniProt:Q9M9U3

Coordinates (TAIR10)

chr1:-:6458020..6459658

Molecular Weight (calculated)

23135.60 Da

IEP (calculated)

9.58

GRAVY (calculated)

0.55

Length

206 amino acids

Sequence (TAIR10)
(BLAST)

001: MSRIMGLFDL EKHFAFYGAY HSNPINILIH IIFVWPIFFS VLLLLHSSTP IFDPSQLGFS QSLTLDGVLR FNVGFIFALI YALFYIGLDK KSGFVAALMC
101: FSCWVGSSFL AVRLGSSLAL KVGLASQLLC WTGQFVGHGV FEKRAPALLD NLLQAFLMAP FFVLLEVLQS VFGYEPYPGF QARVNAKVES DIKEYRAKKQ
201: KKNKIT