AT1G18620.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74160.1); Has 1906 Blast hits to 1265 proteins in 203 species: Archae - 0; Bacteria - 130; Metazoa - 671; Fungi - 139; Plants - 265; Viruses - 11; Other Eukaryotes - 690 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:6410191..6414269 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 114123.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.64 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.78 | ||||||||||||||||||||||||||||||||
| Length | 1014 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MELVLFLLGI YWKHNKEELR HCHYREKSSN SLLFVTSSKF RRRRFAGEPS WFQKKIGCMN GIFQIFDRHH ILTSRRKSLT LGNAHVNSIN FERDSVDAIC 0101: QQRSAFQCQD SNLVSSNGLS EKLTRLSTEC SRVSFSSSCS SSSPLSSEVN REVQPEISAD DRVIFPESPT SDPVMSQGTG ARVGLDLRDV VRDSMYREAR 0201: GLSDVCRQNR REDSPRPYGL KQSRPVDFNE SCRALAKLRK TSHHYYNEVD MKDTSRYYVD SRGKSKSGKK LKELPRLSLD SRDHVDLKSG NKLSESFSRS 0301: SSMNKVSGSP KRPPSVVAKL MGLETLPGSP LSRDRFNMFD DNSDPFARSL RENSLNRSLR FSPSSPRSLG KDPAASSSSP RWRSSEFVMK PLSSLRYPIE 0401: PAPWKQTERN RFSQKQACRS VKSLSQSMEG KLKDLEVKHS GKDLRALKDI LEAMQSKGLF DTRKQQQCSN LEAQRDYELA DSATSKHDSI DLRNPVIPSN 0501: MRGPIVIMKP ARLVEKSGIP SSSLIPIHSL SGLNKTCREE PVNVRRSSTS RKAVKDRSPG NQRAEPCISS DKKSSSRNVM SSQVYKESTS KNSGPASSKL 0601: QQMKPEHDKR SRPPASPSDS SKLRKQISRQ PVESTTSPGG RRSRPRDQRS LQQNDGQLSQ MSNKSRTKIE ATLSIENGGK SPSVIEAAKA VVSNLIQNKS 0701: SPTFSEDGSS EHPSPVSVLN AEIYREIEPS PVKIQASEGS VNGSINSGVE HCEEDQWNPA YSFSKTTTSF SPEMNRKKLQ NVEHLVQKLK RLNSSHDETS 0801: QDYIASLCEN SDPDTDHRYI SEILLASGLL LRDLGSGLTT FQLHPSGHPI NPELFLVIEQ TKGCSSSSNE KINRKLVFDA VNEMLGKKLA FVESYVDPWM 0901: KQAKARKKVL SAQNLLKELC SEIEILQKQA KKRSENLLLL EEEEEEEEDF LKCILDEDMA IQSEKWTDFD DAIPGLVLDM ERLLFKDLVK EIVHGEIDRL 1001: QGNSRRQKTV LADE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)