AT1G18310.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.344 vacuole 0.211 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : glycosyl hydrolase family 81 protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
glycosyl hydrolase family 81 protein; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, endo-1,3(4)-beta-glucanase activity; INVOLVED IN: cell wall macromolecule catabolic process; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 81 (InterPro:IPR005200); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 81 protein (TAIR:AT5G15870.1); Has 441 Blast hits to 435 proteins in 142 species: Archae - 0; Bacteria - 86; Metazoa - 4; Fungi - 179; Plants - 58; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:6301200..6303956 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 73027.60 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.06 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||
| Length | 649 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASSNALFLF PETKSSVLPD PSRFFSPDLL SNPLPTNSFF QNFTLKNGDQ AEYFHPYLIK SVDSSLCISY PSLFHNSDFF YEVFTADIII SGSNGPGPRS 101: RKTHIISSFS DLVVTLDFPS SNLRFFLVRG SPSSSTKWSD KLTNNQRWLI YASSPIDLTK HGDSSIHCRG GFTGIVRITV LPGSNPGYES TLDRFSSCYP 201: VSGDADFTKP FTLKYMWEKR GSGDLLMLAH PLHLKLLAKD ASSLFQQSTL LLVCPDRGCT NSSVTVLDHF RYKSIDGDLV GVVGDSWVLK PDSVSVTWHS 301: MKGVKKDSYK EIISALGKDV NGLNSSAEVT SSSYFYGKLI ARAARFALIA EEVCYLDVIP KIVTYLKNMI EPWLDGSFKP NGFLYDPKWG GLITKQGSKD 401: SQADFGFGIY NDHHYHIGYF LYAIAVLAKF DPLWGERYRA QAYSLLADFM TFGRKDDNNS NSSYPRLRNF DLFKLHSWAG GLTEFWDGRN QESTSEAVNA 501: YYSAALLGLA YGDKHLVETA STIMTLEIHA AKMWWQVKKG EALYPKDFTA ENRVVGVLWS TKRDSSLWFG PKEWKECRLG IQLLPILPLV NWTLPALQRN 601: GVGEGWKGFL YALESLYDKD GAIKKIKRLN MYDDGNSLSN LLWWVHSRD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)