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AT1G18280.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT1G73560.1); Has 517 Blast hits to 515 proteins in 27 species: Archae - 0; Bacteria - 3; Metazoa - 3; Fungi - 0; Plants - 507; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JEZ8eggNOG:ENOG410ZPM3EMBL:AC013354EMBL:AC069551
EMBL:AY086971EMBL:BT025741EMBL:CP002684EMBL:DQ446260
EnsemblPlants:AT1G18280EnsemblPlants:AT1G18280.1entrez:838408GeneID:838408
GO:GO:0008233GO:GO:0031225Gramene:AT1G18280.1hmmpanther:PTHR33044
hmmpanther:PTHR33044:SF11InterPro:IPR016140KEGG:ath:AT1G18280OMA:VAKDATC
Pfam:PF14368PhylomeDB:Q9LE56Proteomes:UP000006548RefSeq:NP_173264.1
SMART:SM00499SMR:Q9LE56STRING:3702.AT1G18280.1SUPFAM:SSF47699
TAIR:AT1G18280UniGene:At.14945UniProt:Q9LE56
Coordinates (TAIR10) chr1:+:6294403..6295207
Molecular Weight (calculated) 18073.60 Da
IEP (calculated) 7.92
GRAVY (calculated) 0.21
Length 180 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAVRFAVAV VLVFCYVTSS NAQMTSPPSG GAGGDAHSLP CIQKLMPCQP YLHLATPPPA TCCMPLNEIV AKDATCLCAV FNNVDMLKSL NLTKENALDL
101: PKACGAKADV SLCKTSAGTN SSSTPPATPK TPPASSTSTG TGSGSTGNAA PSTAKPTSSA PAINFGGLSF ASAVVATLFF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)