AT1G18130.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Class II aaRS and biotin synthetases superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Class II aaRS and biotin synthetases superfamily protein; FUNCTIONS IN: threonine-tRNA ligase activity, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: threonyl-tRNA aminoacylation, translation; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Anticodon-binding (InterPro:IPR004154), Threonyl-tRNA synthetase, class IIa, conserved region (InterPro:IPR018158); BEST Arabidopsis thaliana protein match is: Threonyl-tRNA synthetase (TAIR:AT5G26830.1); Has 8735 Blast hits to 8735 proteins in 2871 species: Archae - 292; Bacteria - 5591; Metazoa - 245; Fungi - 244; Plants - 92; Viruses - 0; Other Eukaryotes - 2271 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:6235895..6238799 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 19206.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.62 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||||||||||
| Length | 165 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSKNHPDEDE TNLSSAVDFH LRDRFKLEYS AENETMIERS VLIHRAVLSS VERLFAILLE QYKGKFPFWL SPRQAIVCSV SEDYRSYADK VRDQIHEAGY 101: YVDVDTTDRN VSDKVQEAQV AHYNYILVVG DEEARTGQVT VWLRDEMMSI ETLSDEFKLK TANFL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)