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AT1G18070.3
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.979
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Translation elongation factor EF1A/initiation factor IF2gamma family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Translation elongation factor EF1A/initiation factor IF2gamma family protein; FUNCTIONS IN: translation factor activity, nucleic acid binding, GTP binding, GTPase activity; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT5G60390.3).
Protein Annotations
BioCyc:ARA:GQT-2071-MONOMEReggNOG:COG5256eggNOG:KOG0459EMBL:AC034107
EMBL:CP002684EnsemblPlants:AT1G18070EnsemblPlants:AT1G18070.3entrez:838387
ExpressionAtlas:Q9LMS7Gene3D:3.40.50.300GeneID:838387GO:GO:0003743
GO:GO:0003746GO:GO:0003924GO:GO:0005525Gramene:AT1G18070.3
hmmpanther:PTHR23115hmmpanther:PTHR23115:SF133HOGENOM:HOG000229291InterPro:IPR000795
InterPro:IPR004160InterPro:IPR004161InterPro:IPR009000InterPro:IPR009001
InterPro:IPR027417InterPro:IPR031157ncoils:CoilOMA:AQENTEI
Pfam:PF00009Pfam:PF03143Pfam:PF03144Pfscan:PS51722
PRINTS:PR00315PROSITE:PS00301PROSITE:PS51722Proteomes:UP000006548
Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_001185026.1scanprosite:PS00301
SMR:Q9LMS7STRING:3702.AT1G18070.3SUPFAM:SSF50447SUPFAM:SSF50465
SUPFAM:SSF52540TAIR:AT1G18070UniGene:At.43340UniGene:At.8951
UniProt:Q9LMS7
Coordinates (TAIR10) chr1:-:6214236..6218211
Molecular Weight (calculated) 60510.50 Da
IEP (calculated) 4.96
GRAVY (calculated) -0.34
Length 543 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLEAEIRAL QLESADENNG VVIPEVHNSH EVENLDKAPE DLKDEVQESI PVPDEQEASE DHDEVMLHPV HNPAKAKEKA AQEKAAKEEA EDVAEANKKR
101: HLNVVFIGHV DAGKSTIGGQ ILFLSGQVDD RQIQKYEKEA KDKSRESWYM AYIMDTNEEE RLKGKTVEVG RAHFETESTR FTILDAPGHK SYVPNMISGA
201: SQADIGVLVI SARKGEFETG YERGGQTREH VQLAKTLGVS KLIVVVNKMD DPTVNWSKER YDEIEQKMVP FLKASGYNTK KDVVFLPISG LMGKNMDQRM
301: GQEICPWWSG PSFFEVLDSI EIPPRDPNGP FRLLTGIDFM NCRMPIIDKF KDMGTVVMGK VESGSIREGD SLVVMPNKEQ VKVVAIYCDE DKVKRAGPGE
401: NLRVRITGIE DEDILSGFVL SSIVNPVPAV TEFVAQLQIL ELLDNAIFTA GYKAILHIHA VVEECEIIEL KSQIDLKTRK PMKKKVLFVK NGAAVVCRIQ
501: VTNSICIEKF SDFPQLGRFT LRTEGKTIAV GKVTELLSSV SSA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)