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AT1G17810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:20833734 (2011): endoplasmic reticulum
  • PMID:20833734 (2011): plasma membrane
  • PMID:20833734 (2011): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : beta-tonoplast intrinsic protein
Curator
Summary (TAIR10)
beta-tonoplast intrinsic protein (beta-TIP) mRNA, complete
Computational
Description (TAIR10)
beta-tonoplast intrinsic protein (BETA-TIP); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: Aquaporin-like superfamily protein (TAIR:AT1G73190.1); Has 10707 Blast hits to 10694 proteins in 2147 species: Archae - 83; Bacteria - 5023; Metazoa - 1508; Fungi - 447; Plants - 2508; Viruses - 2; Other Eukaryotes - 1136 (source: NCBI BLink).
Protein Annotations
BioGrid:23598eggNOG:COG0580eggNOG:KOG0223EMBL:AC034106
EMBL:AF026275EMBL:AK229035EMBL:CP002684EnsemblPlants:AT1G17810
EnsemblPlants:AT1G17810.1entrez:838359Gene3D:1.20.1080.10GeneID:838359
Genevisible:O22588GO:GO:0006833GO:GO:0009705GO:GO:0015250
GO:GO:0015254GO:GO:0015793GO:GO:0016021GO:GO:0034220
GO:GO:0042807hmmpanther:PTHR19139hmmpanther:PTHR19139:SF30HOGENOM:HOG000288286
InParanoid:O22588InterPro:IPR000425InterPro:IPR022357InterPro:IPR023271
KEGG:ath:AT1G17810KO:K09873OMA:QAHDEAPPANTHER:PTHR19139
PaxDb:O22588Pfam:O22588Pfam:PF00230PhylomeDB:O22588
PIR:B86313PRIDE:O22588PRINTS:PR00783PRO:PR:O22588
PROSITE:PS00221ProteinModelPortal:O22588Proteomes:UP000006548Reactome:R-ATH-1237044
Reactome:R-ATH-1247673Reactome:R-ATH-432040Reactome:R-ATH-432047RefSeq:NP_173223.1
scanprosite:PS00221SMR:O22588STRING:3702.AT1G17810.1SUPFAM:SSF81338
TAIR:AT1G17810tair10-symbols:BETA-TIPTIGRfam:TIGR00861TIGRFAMs:TIGR00861
TMHMM:TMhelixUniGene:At.48202UniGene:At.69974UniProt:O22588
Coordinates (TAIR10) chr1:+:6130209..6131442
Molecular Weight (calculated) 28184.40 Da
IEP (calculated) 7.08
GRAVY (calculated) 0.64
Length 267 amino acids
Sequence (TAIR10)
(BLAST)
001: MATSARRAYG FGRADEATHP DSIRATLAEF LSTFVFVFAG EGSILALDKL YWDTAAHTGT NTPGGLVLVA LAHALALFAA VSAAINVSGG HVNPAVTFAA
101: LIGGRISVIR AIYYWVAQLI GAILACLLLR LATNGLRPVG FHVASGVSEL HGLLMEIILT FALVYVVYST AIDPKRGSIG IIAPLAIGLI VGANILVGGP
201: FDGASMNPAR AFGPALVGWR WSNHWIYWVG PFIGGALAAL IYEYMIIPSV NEPPHHSTHQ PLAPEDY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)