AT1G17545.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.640 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein phosphatase 2C family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein phosphatase 2C family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: homology to ABI1 (TAIR:AT1G72770.2); Has 482 Blast hits to 481 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 471; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:6033109..6033908 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 19537.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.78 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||
| Length | 179 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRKSKANNDF RITNSRVQAS VEFNNSCGRY NGSGIEDHGR VLATSIILND DAVPTTQVLI TTSHHDNVAK RKESFISFFK LPIRMLMCDH EGIISPTLTC 101: LTSHFFGIYD GHRRSRPVSG SVSSDDRMVL QAVSPETVGS TAVVALVCSS HIIVSNCGGS RVVLLRGKES MPLSVDQKV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)