AT1G17450.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : B-block binding subunit of TFIIIC | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
B-block binding subunit of TFIIIC; CONTAINS InterPro DOMAIN/s: B-block binding subunit of TFIIIC (InterPro:IPR007309); BEST Arabidopsis thaliana protein match is: B-block binding subunit of TFIIIC (TAIR:AT1G59453.1); Has 94 Blast hits to 81 proteins in 18 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:5988643..5996693 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 196321.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.93 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.49 | ||||||||||||||||||||||||
| Length | 1753 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDSIVCTALE EICCQGNTGI PLVSLWSRLS PPPLSPSVKA HVWRNLLAVP QLQFKAKNTV YEPSDASIQQ LEEALRLDLR IFANEKLRGN FVGLYDAQSN 0101: NTTISAIQRR VLERLAVARA NGVAQNLLAK EFGIEGRNFF YIVKHLESRG LVVKQPAIVR TKEVDGEGDS KTTSCISTNM IYLSRYAKPL GSQQRFEICK 0201: EDSLLEQEAT PAGDSLQSES TKEDTLIKDF LPAMQAICDK LEETNEKVLV VSDIKQDLGY LGSHSRHRAW RSVCRRLTDS HVVEEFDAVV NNKVERCLRL 0301: LKRFSAKDFN YSGKKQLLKF GRSIQKTEQT LELPIDNQIY DMVDAEGSKG LAVMEAESHK KTRVFRVWTS GNAGSECSDR FPEKAENRSW ENNVPINDFG 0401: TPHDTGGLTQ TSIEHSIAIS DADFATPARL TDSENNSGVL HFATPGRLTD SESNSGVPDC SPSDAKRRHV LTRRNLQESF HEICDKVVDT AMGSPDLALS 0501: EMNHLAPPKP AKPKVHQPQP ITVENSRRER RILERLNEEK FVVRAELHKW LLSLEKDRSS KVDRKTIDRI LNRLQEEGLC NCMNISVPNV TNCGRNRSSV 0601: VVFHPSVQSL TRDIVGEIHD RIRSFELGLR GQNLSKRKSN ELIPILNDIQ RGQTNVDLDA RASKSGAMRA NGFVLAKMKS DNLFALEDAF KAMPLELFLQ 0701: VVGSTQKADD MMKKCKQVMR LSELPGEEYK LLMDTLATGR LSMLIDILRR LKMVSSRLRR DEIEEKYANL THAMELKPYI EEPVFVAATS NVMSLDFRPR 0801: IRHDFILSNR DAVDEYWLTL EYCYAAADHR AAKLAFPGSV VQERAKLLKR IAIDEKEKLS FKECEKIAKD LNLTLEQLDF GFKAFSYLVM HVYHAKHGRR 0901: VKSKSKDKHL AIDNSSSSSS GKRKRGTLVK TTGEGVRSII VDGEKVLNSD AIDASNSEKF LNSLEEHQEH NLQENSEIRD LTEDEGQCSS IINQYASSKT 1001: TSTPSQRFSW TDEADRKLLS QYVRHRAALG AKFHGVMWAS VPELPAPPLA CKRRVQILMK NDKFRKAIMS LCNLLSERYA RHLETKQKCL PESNKSHVLV 1101: RYLSPAIGGT DSGSVEQGKD ICFDEEKWDD FNEKSISQAF NDVLELKKMA KLVAPKRTKS SREWSNRDII DEGSEMVPPA IHSEDIQNVS VDQVKDTSRR 1201: SGHYRLHQTV RPLDEKDNDS IQVRKSLAVS TAAELLKLVF LSMPTAPGMP NLLEDTLRRY SERDLFTAYS YLRDKKFLVG GSGGQPFVLS QNFLHSISKS 1301: PFPVNTGTRA AKFSSWLFEH ERDLMAGGVT LTSDLQCGDI LNFFSLVSSG ELSISVSLPE EGVGEPGDRR GLKRRADDIE ESEAESSKKL KLLGEGEINF 1401: RKEKGFPGIA VSVRRATIPT ANAIELFKDD DSRTGEFHLK WGEANSGCDS DDMKELFNST DSTVIPSSLG DSPWQAMASF TSSIMSESTD EEVSLFSPRV 1501: FETVSNALQK AGDQGLSIEE VHSLIDIPSQ ETCDCIVDVL QTFGVALKVN GYNNFRVVHS FYRSKYFLTL EEDGTSQKSQ QSLPVNYLER AVGEHRSKDI 1601: IASSYSTSQD MREHVAGNSV HKVTILNLPE TAQTSGLHEA SIKAPSVTFG TGIEGETKES TSEKSPVPIY PWVNADGSIN KIVFDGLVRR VLGTVMQNPG 1701: IPEDEIINLM DILNPQKASG VDDTRRLYES EGNGANQIHR SSVSVSRSRL NRS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)