AT1G17270.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.513 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : O-fucosyltransferase family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
O-fucosyltransferase family protein; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT5G50420.1); Has 98 Blast hits to 96 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:5909443..5911624 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 63625.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.63 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||
| Length | 564 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVRNSSDEEE DHRNLIPQND TRDNDLNLRP DARTVNMANG GGRSPRSALQ IDEILSRARN RWKISVNKRY VVAAVSLTLF VGLLFLFTDT RTFFSSFKLD 101: PMSSRVKESE LQALNLLRQQ QLALVSLLNR TNFNSSNAIS SSVVIDNVKA ALLKQISVNK EIEEVLLSPH RTGNYSITAS GSDSFTGSYN ADICRKVDQK 201: LLDRKTIEWK PRPDKFLFAI CLSGQMSNHL ICLEKHMFFA ALLDRVLVIP SSKFDYQYDK VIDIERINTC LGRTVVISFD QFKEIDKKNN AHIDRFICYV 301: SSPQPCYVDE DHIKKLKGLG VSIGGKLEAP WSEDIKKPTK RTSQEVVEKF KSDDGVIAIG DVFYADMEQD LVMQPGGPIN HKCKTLIEPS RLILVTAQRF 401: IQTFLGKNFI SLHLRRHGFL KFCNAKSPSC FYPIPQAADC ISRMVERANA PVIYLSTDAA ESETGLLQSL VVVDGKVVPL VKRPPQNSAE KWDSLLYRHG 501: IEDDSQVYAM LDKTICAMSS VFIGASGSTF TEDILRLRKD WGTSSMCDEY LCRGEEPNFI AENE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)