AT1G17060.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.521 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cytochrome p450 72c1 | ||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein with similarity to other cytochrome P450's and is a homolog of BAS1. Over expression causes a dwarf phenotype resembling brassinolide resistant mutants. Double mutant analysis of sob7/bas1 loss of function mutants suggests these genes have redundant functions in light responsiveness. SOB7 may function in metabolizing brassinolides. Expressed in leaf, root, stem and silique but expression highest in flower and cauline leaves. Dominant overexpressing plants have dwarf phenotype, short siliques/seeds, rounded dark green leaves and short hypocotyls in light and dark. Loss of function alleles result in plants with long hypocotyls. | ||||||||||||
| Computational Description (TAIR10) |
cytochrome p450 72c1 (CYP72C1); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: response to light stimulus, brassinosteroid metabolic process, unidimensional cell growth; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group IV (InterPro:IPR002403), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 72, subfamily A, polypeptide 15 (TAIR:AT3G14690.1); Has 27908 Blast hits to 27397 proteins in 1448 species: Archae - 65; Bacteria - 2698; Metazoa - 11276; Fungi - 5119; Plants - 7743; Viruses - 3; Other Eukaryotes - 1004 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:5832282..5835255 | ||||||||||||
| Molecular Weight (calculated) | 54934.10 Da | ||||||||||||
| IEP (calculated) | 9.91 | ||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||
| Length | 476 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLEIITVRKV FLIGFLILIL NWVWRAVNWV WLRPKRLEKY LKKQGFSGNS YRILMGDMRE SNQMDQVAHS LPLPLDADFL PRMMPFLHHT VLKHGKKCFT 101: WYGPYPNVIV MDPETLREIM SKHELFPKPK IGSHNHVFLS GLLNHEGPKW SKHRSILNPA FRIDNLKSIL PAFNSSCKEM LEEWERLASA KGTMELDSWT 201: HCHDLTRNML ARASFGDSYK DGIKIFEIQQ EQIDLGLLAI RAVYIPGSKF LPTKFNRRLR ETERDMRAMF KAMIETKEEE IKRGRAGQNV TSSLFVWTLV 301: ALSQHQDWQN KARDEISQAF GNNEPDFEGL SHLKVVTMIL HEVLRLYSPA YFTCRITKQE VKLERFSLPE GVVVTIPMLL VHHDSDLWGD DVKEFKPERF 401: ANGVAGATKG RLSFLPFSSG PRTCIGQNFS MLQAKLFLAM VLQRFSVELS PSYTHAPFPA ATTFPQHGAH LIIRKL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)