AT1G16980.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.918 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : trehalose-phosphatase/synthase 2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active but no trehalose phosphatase (TPP)-like domain. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
trehalose-phosphatase/synthase 2 (TPS2); CONTAINS InterPro DOMAIN/s: Alpha,alpha-trehalose-phosphate synthase (InterPro:IPR012766), Glycosyl transferase, family 20 (InterPro:IPR001830), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: trehalose-phosphatase/synthase 3 (TAIR:AT1G17000.1); Has 3329 Blast hits to 3259 proteins in 973 species: Archae - 45; Bacteria - 1730; Metazoa - 120; Fungi - 651; Plants - 352; Viruses - 0; Other Eukaryotes - 431 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:5807311..5811488 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 92878.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.74 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 821 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDYDDARGER PRLLVVANRL PVSAKRTGEN SWSLEMSPGG LVSGLLGITS QFDTKWVGWP GVDVHDEIEK NALTESLAEM KCIPVFLNGV FDQYYNGYCN 101: GILWPILHHM GLPQEDQHDT NQTFETQYDA YKKANRMFLD VIIDNYEEGD IVWCHDYHLM FLPQYLKEYN NKIKVGWFLH SPFPSSEVYK TLPSRSELLR 201: AILAADLLGF HTYDFARHFL STCTRILGVE GTHEGVVYQG RVTRVAVFPI GIDPDRFIRT CKLPEVTQQM NELQEKFAGK KVILGVDRLD MIKGIPQKYL 301: AFEKFLEENP YWRDKVVLVQ IAVPTRNDVP EYRKLKSQVH GLVGRINGRF GSVSSLPIHH LDCSVDFNYL CAIYAIADVM LVTSLRDGMN LVSYEFVACQ 401: EAKKGVLVLS EFAGAGQSLG VGALIVNPWD VTEVSSAIKE ALNMPAEERE TRHRSNFQYV CTHSAEKWGL DFMSELNGII PESEMQMRKI PLQLPEQDVI 501: QQYSQSNNRL IILGFFGTLA EPMNSGTKEM DLKLNPELKG TLKALCNDPK TTVVVLSRSG KNILNKNFGE SNIWLAAENG MFEKQTTGEW VTNMPQNVNL 601: DWVDGVKNVF KYFTDRTPRS YFEASETSLV WNYEYADVEF GRAQARDLLQ YLWAGPISNA SVDVVRGNHS VEVHAIGETK GAAIGRILGE IVHRKSMTTP 701: IDFVFCSGYF LEKDEDIYTF FESKILSSKS PNGLDLKKEN YFSAAIGQAR TKARYVIDSA HGVVDLLHKL AVVADTTMTD SFSDSEIYEP RDANANENSK 801: RWINSVRRRK VEIGDTGQIG M |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)