AT1G16800.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G30100.1); Has 9771 Blast hits to 8579 proteins in 1344 species: Archae - 197; Bacteria - 2032; Metazoa - 2727; Fungi - 1277; Plants - 815; Viruses - 364; Other Eukaryotes - 2359 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:5745523..5755263 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 239718.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.62 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||||||
| Length | 2127 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MLSKVSPSGE LLNRWRRIEE DEEENDDSDP SAVRRLNQRK EQWFTDAFTL LISLPKDTHI WCGHGDIMGP LIETFYNYFK DDRVDSPLKV LWKRISEEMR 0101: LCAQCICQHH QTQEMYEKEY ECSSVGPLLV VLRKLDEERV TRHLQEINLK IEKGTYDPDH HHAEVVSVMY EVLMFPFFFD DMSLCTEFEK FIESIDNIHE 0201: LAFAENQEFP GVYALLFLNR RVRVIGYRLA RAMGKLRSAT QLERLQPLLK KFIGILEMEG LPSASQEPRP RIYLDRSSIW LGMTSLLEFL EGPAFEEGIL 0301: EPYPIFVDTV LNHISGDSPE FSLAVNCLKE LFKTLGMSLE ALRDGEHEKQ RRHFLYFLLH QVPVSSNFSL LARRIGHKIA LLIVLRGYKM NPPCPPFECA 0401: HMWGPSLVSS YKDSSLHISL RQPAIDLVQA ILVSDATALL ASLLRNNTGK FMGYEIQYDD DDMESEKNDE MTVDIETWLS SSAVEIKGTL GWKVATGSDD 0501: GGPGKESKNS VTVSKMCLTL IRTLKRLTTC YLVQIGDECR KQWTWVPEMG ETFILSLSDP DDNVRQFGKS MLEHVSNTRG LSCGLKFLCS QTSHLLFVSS 0601: GVRHVLQQVH LSSVLQSFQI LHHFFFLLFK LLKEEEVAIT DVVKSSAGGF LRQPNFNALP VSEGRNPLSS TPELLKFQYL LAEVAWGIIR KCLVEGKTFI 0701: HQSLCQMTCV RLLEILPVVL GKLRVSREES CDTRGTLKDA SDLKWLPDLI DWGRSQLKVV VAYWKRALVA LLDILQGSNS DACSSAVQAI RHVLSSGDTI 0801: DNALTLLNSD DVDIEQLAEQ ISRLVPKANE YQILKPVDVV GKLQDNMMDL TVDETEKESL KNLPSLHKSH QPDINKTLLP IKNISQISSL KKSTSSIDAS 0901: KLSALVLSER DVTVSSSNIV RDLPTTNAEP SKAAGMSREA EKRQNVEDPV SSGIRPNLKK ATDELGPRGT SKEAQKSAIS NAKGMDLRKV VNETEVDPLD 1001: LALKSLKRQS LPLAKSGPIV PKRQVIQLCA PVNKKSDRWQ RQEAGFKRFR PPKLEDWFRK ILQMDYYAIV GLASTKKDES QNVGKFREVP VRFGSPEQYI 1101: QIFQPLVLEE FKAQLQSSFQ EISSLEEIYY GVISVLSIER VDDFHFVRFM QDENDGSNSK SFSENDLVLF TKEHPENSNV GVNMMGKVEG REWDDKKRTS 1201: ILNVRLYLQN ASSRLNQARR NLLERSQWHA SRILNITSQI REFQALSCIK DIPVLPLILS PMNDSNYDSE VKRSDLRSLP HSLQQILKSS FNESQLQAIS 1301: VAIGSSNLMK AFDISLIQGP PGTGKTRTIV AIISGLLASA SHKTSDRGNS EPGHSSSTSR QGMNPSVAVA RAWQDAALAK QLNDNSETNR KIAEKNGRGR 1401: VLICAQSNAA VDELVSRISS LGIYGRDGKM FKPYLVRVGN AKTVHSNSMP FFLDTLVDQR LAEERMRINE SKSNKGADSS ALLRSNLEKV VDQITHFEAK 1501: RANINQESLD AKDKPENEHH NKDDDGKLMS DAELGIRLRR LYEQKRKIYK DLSAVQAQER KANYEMRTLK QKLRKSILKE AQIVVTTLSG CGGDLYSVCA 1601: ESLAAHKFGS PSEDNLFDAV VIDEAAQALE PATLIPLQLL KSRGTKCIMV GDPKQLPATV LSNVASKFLY ECSMFERLQR AGYPILMLTQ QYRMHPEICR 1701: FPSMHFYDNK LLNGVDMSSK SAPFHENHHL GPYVFYDIVD GQEHRSGDSS SVCNEQEAEA AVQLLRFFKK RYPSEFVAGR IGIITPYKRQ LAVLRSRFTG 1801: AFGAQVTADM EMNTVDGFQG KEVDILVLST VRATHSAPDG VNQSRIGFVA DVRRMNVALT RAKLSLWVLG NTRTLQRDHN WGALVKDAKE REVIIPVKRP 1901: YNYMFGENVM EQNHSENLPK NFPKPDKQHS RRKEQRAETS SDRKLRKTDG DVVPISSKGS ESKHTRRNAK EEASSQREKL VASCEKVTSE ETLRRSHEKK 2001: EKMKGREKSS NPEITDANSS KNENSNEWKK SKKASSKLDS SKRANPTDKI GQQDRQINKG NASNQGGVED MISKRKQQRE AVAAILNSSL IPSHKPKPPK 2101: RPLSPGSTAG SHTRPPKAIK ESTKNNS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)