AT1G16790.1::SUBA5

AT1G16790.1

Subcellular Consensus
(Prediction and Experimental)

min:

:max

SUBAcon:
plastid 1.000
What is SUBAcon?

Predictors

External Curations

AmiGO : plastid 12938931
AmiGO : plastid 15322131
AmiGO : plastid 18431481
TAIR : plastid 12938931
TAIR : plastid 18431481
TAIR : plastid 15322131

Experimental Localisations and PPI

FP	MS/MS	PPI
	PMID:31975158 (2020): plastid PMID:31520498 (2020): mitochondrion PMID:31023727 (2019): mitochondrion PMID:30962257 (2019): plastid PMID:30135097 (2018): plastid PMID:29967049 (2018): plastid PMID:28865150 (2017): extracellular region plant-type cell wall PMID:27137770 (2016): plastid plastid stroma PMID:24872594 (2014): plastid PMID:24124904 (2013): plastid PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane PMID:23390424 (2013): plastid plastid envelope PMID:22923678 (2012): plastid PMID:22550958 (2012): plastid PMID:21531424 (2011): plastid PMID:20061580 (2010): plastid plastid envelope PMID:18431481 (2008): plastid PMID:15322131 (2004): plastid PMID:12938931 (2003): plastid	PMID:24556609 (2014): AT1G43170.1:None: PMID:24556609 (2014): AT1G76810.1:None: PMID:24556609 (2014): AT5G02960.1:None: PMID:24556609 (2014): AT5G20920.1:None: PMID:24556609 (2014): AT4G18060.1:None: PMID:24556609 (2014): AT4G24190.1:None: PMID:24556609 (2014): AT5G55660.1:None: PMID:24556609 (2014): AT5G06970.1:None: PMID:24556609 (2014): AT4G29520.1:None: PMID:24556609 (2014): AT1G02780.1:None: PMID:24556609 (2014): AT4G32760.1:None: PMID:24556609 (2014): AT5G22360.1:None: PMID:24556609 (2014): AT2G25670.1:None: PMID:24556609 (2014): AT2G23940.1:None: PMID:24556609 (2014): AT1G04750.1:None: PMID:24556609 (2014): AT1G36240.1:None: PMID:24556609 (2014): AT3G56190.1:None: PMID:24556609 (2014): AT5G39510.1:None: PMID:24556609 (2014): AT2G38750.1:None: PMID:24556609 (2014): AT1G27400.1:None: PMID:24556609 (2014): AT5G61970.1:None: PMID:24556609 (2014): AT2G25980.1:None: PMID:24556609 (2014): AT2G18020.1:None: PMID:24556609 (2014): AT3G49100.1:None: PMID:24556609 (2014): AT1G56110.1:None: PMID:24556609 (2014): AT5G54110.1:None: PMID:24556609 (2014): AT1G04170.1:None: PMID:24556609 (2014): AT5G11150.1:None: PMID:24556609 (2014): AT3G15356.1:None: PMID:21798944 (2011): AT4G26455.1:None: PMID:21798944 (2011): AT2G31260.1:None: PMID:21798944 (2011): AT4G19030.1:None: PMID:21798944 (2011): AT4G35580.1:None: PMID:21798944 (2011): AT5G22290.1:Y2H:

SUBAcon links
AGI-AGI relationships

Coexpression

PPI

no coexpression data

AT1G04170.1 cytosol
AT5G61970.1 cytosol
AT5G20920.1 cytosol
AT5G02960.1 cytosol
AT4G26455.1 cytosol
AT3G49100.1 cytosol
AT2G25670.1 cytosol
AT2G18020.1 cytosol
AT1G02780.1 cytosol
AT1G76810.1 cytosol
AT1G36240.1 cytosol
AT1G43170.1 cytosol
AT4G29520.1 endoplasmic reticulum
AT4G24190.1 endoplasmic reticulum
AT2G23940.1 endoplasmic reticulum
AT3G15356.1 extracellular
AT4G18060.1 golgi
AT5G06970.1 golgi
AT5G22360.1 golgi
AT5G55660.1 nucleus
AT2G25980.1 nucleus
AT1G56110.1 nucleus
AT4G35580.1 nucleus
AT5G22290.1 nucleus
AT4G19030.1 plasma membrane
AT4G32760.1 plasma membrane
AT5G54110.1 plasma membrane
AT1G04750.1 plasma membrane
AT2G38750.1 cytosol, plasma membrane
AT1G27400.1 cytosol, nucleus, plastid
AT5G11150.1 vacuole
AT5G39510.1 vacuole
AT2G31260.1 vacuole
AT3G56190.1 vacuole

Description (TAIR10)

protein_coding : ribosomal protein-related

Curator
Summary (TAIR10)

Computational
Description (TAIR10)

ribosomal protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; Has 10 Blast hits to 10 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Protein Annotations

DNASU:838250	eggNOG:ENOG410J168	eggNOG:ENOG410Y1QI	EMBL:AK175175
EMBL:BT010493	EMBL:CP002684	EnsemblPlants:AT1G16790	EnsemblPlants:AT1G16790.1
entrez:838250	GeneID:838250	GO:GO:0005840	GO:GO:0009507
GO:GO:0009535	GO:GO:0009536	GO:GO:0009941	Gramene:AT1G16790.1
HOGENOM:HOG000090877	IntAct:Q6NQG3	KEGG:ath:AT1G16790	OMA:QELISHY
PhylomeDB:Q6NQG3	Proteomes:UP000006548	RefSeq:NP_173123.1	STRING:3702.AT1G16790.1
TAIR:AT1G16790	UniGene:At.41868	UniProt:Q6NQG3

Coordinates (TAIR10)

chr1:+:5744638..5745072

Molecular Weight (calculated)

15455.40 Da

IEP (calculated)

10.24

GRAVY (calculated)

-0.41

Length

144 amino acids

Sequence (TAIR10)
(BLAST)

001: MKQPATPNAA EETKSEQKQK SKKFPTPTEL ISHYQKRGLE PAEASIKVIE DLQNALVRVV SSSRNASSKD KLVTDARKID AINGRLAVVD AKLETKPGYV
101: ETFALGLASG ATLNGISAVW PHVTRGIGQI WSAVRIGTDP SSTS